Wall clock time and date at job start Mon Mar 30 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37210 * 124.91990 * 2 1 4 4 C 1.34286 * 109.63697 * 180.02562 * 3 2 1 5 5 C 1.46866 * 106.81713 * 0.02562 * 4 3 2 6 6 C 1.40995 * 127.10448 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00297 * 198.93648 * 6 5 4 8 8 C 1.39445 * 120.00291 * 18.93039 * 6 5 4 9 9 N 1.31288 * 120.00646 * 196.08096 * 8 6 5 10 10 Si 1.86799 * 119.99594 * 16.08026 * 8 6 5 11 11 H 1.48497 * 109.47576 * 269.99812 * 10 8 6 12 12 H 1.48503 * 109.47068 * 30.00233 * 10 8 6 13 13 H 1.48509 * 109.47202 * 149.99923 * 10 8 6 14 14 C 1.36042 * 124.91233 * 180.29802 * 2 1 3 15 15 N 1.37691 * 126.21004 * 359.97438 * 14 2 1 16 16 H 1.08998 * 109.47389 * 89.97459 * 1 2 3 17 17 H 1.09000 * 109.47119 * 209.97822 * 1 2 3 18 18 H 1.08999 * 109.46514 * 329.97122 * 1 2 3 19 19 H 1.08004 * 125.18002 * 359.97438 * 3 2 1 20 20 H 1.08006 * 126.59080 * 180.02562 * 4 3 2 21 21 H 0.97001 * 119.99421 * 355.07874 * 9 8 6 22 22 H 0.97002 * 119.99718 * 180.17991 * 15 14 2 23 23 H 0.96992 * 119.99658 * 0.18138 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2504 1.1251 0.0000 4 6 3.5458 0.7711 -0.0006 5 6 3.5851 -0.6970 -0.0016 6 6 4.7320 -1.5172 -0.0029 7 1 4.6565 -2.5508 -0.3071 8 6 5.9639 -0.9939 0.3883 9 7 7.0720 -1.6348 0.0965 10 14 6.0376 0.6189 1.3278 11 1 6.1437 1.7468 0.3676 12 1 4.8046 0.7751 2.1406 13 1 7.2231 0.6172 2.2222 14 6 2.2436 -1.1156 -0.0058 15 7 1.7981 -2.4184 -0.0121 16 1 -0.3634 0.0005 -1.0276 17 1 -0.3633 -0.8902 0.5135 18 1 -0.3632 0.8897 0.5143 19 1 1.8828 2.1406 -0.0004 20 1 4.3955 1.4379 -0.0003 21 1 7.0309 -2.5061 -0.3277 22 1 2.4361 -3.1491 -0.0133 23 1 0.8464 -2.6054 -0.0153 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259606230.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:45 Heat of formation + Delta-G solvation = 48.336234 kcal Electronic energy + Delta-G solvation = -9237.526039 eV Core-core repulsion = 7472.544944 eV Total energy + Delta-G solvation = -1764.981095 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.35262 -33.35422 -32.84116 -31.31366 -27.15671 -25.77718 -22.93130 -19.96213 -18.23788 -17.31171 -16.29639 -14.94724 -14.35896 -13.83726 -13.62273 -12.67879 -12.23673 -11.95144 -11.65637 -11.19871 -10.47900 -10.39394 -9.62214 -9.23745 -9.00812 -8.58394 -7.23673 -6.66136 -6.07393 -3.58620 3.43695 3.51839 3.72357 3.86619 3.96766 4.33766 4.53110 5.12557 5.32444 5.61075 5.74971 5.76895 6.08106 6.75242 7.11473 7.31361 7.81640 8.08201 8.17023 8.29439 8.84962 8.91817 9.15637 9.28566 9.52084 10.75302 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.065661 B = 0.019660 C = 0.015819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.332021 B = 1423.895613 C = 1769.653713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.473 5.473 3 C -0.056 4.056 4 C -0.237 4.237 5 C -0.027 4.027 6 C -0.506 4.506 7 H 0.057 0.943 8 C 0.033 3.967 9 N -0.877 5.877 10 Si 1.083 2.917 11 H -0.287 1.287 12 H -0.269 1.269 13 H -0.303 1.303 14 C 0.156 3.844 15 N -0.868 5.868 16 H 0.050 0.950 17 H 0.063 0.937 18 H 0.068 0.932 19 H 0.138 0.862 20 H 0.121 0.879 21 H 0.271 0.729 22 H 0.404 0.596 23 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 2.929 0.974 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.162 5.162 3 C -0.182 4.182 4 C -0.265 4.265 5 C -0.037 4.037 6 C -0.541 4.541 7 H 0.075 0.925 8 C -0.177 4.177 9 N -0.507 5.507 10 Si 0.913 3.087 11 H -0.215 1.215 12 H -0.194 1.194 13 H -0.232 1.232 14 C -0.047 4.047 15 N -0.418 5.418 16 H 0.069 0.931 17 H 0.081 0.919 18 H 0.087 0.913 19 H 0.155 0.845 20 H 0.139 0.861 21 H 0.082 0.918 22 H 0.234 0.766 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.507 4.095 1.608 10.476 hybrid contribution -1.363 -1.543 -0.828 2.219 sum -10.870 2.552 0.780 11.193 Atomic orbital electron populations 1.21567 0.80714 1.02309 1.01055 1.43021 1.03640 1.05247 1.64276 1.20753 0.90504 0.88720 1.18230 1.21673 0.94654 0.95488 1.14681 1.18035 0.89116 0.90555 1.06043 1.19306 0.92936 0.97946 1.43914 0.92464 1.26674 0.91396 1.04835 0.94821 1.70761 1.29353 1.14533 1.36013 0.83528 0.74873 0.73775 0.76504 1.21524 1.19390 1.23193 1.17448 0.88901 0.79428 1.18898 1.40440 1.07289 1.02963 1.91069 0.93107 0.91854 0.91287 0.84457 0.86109 0.91829 0.76603 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.84 59.85 0.65 1.95 14 2 N -0.47 -10.01 3.14 -122.62 -0.39 -10.39 14 3 C -0.06 -1.22 11.31 -16.54 -0.19 -1.41 14 4 C -0.24 -6.04 8.27 -37.49 -0.31 -6.35 14 5 C -0.03 -0.76 5.63 -104.50 -0.59 -1.35 14 6 C -0.51 -15.11 9.56 -38.09 -0.36 -15.48 14 7 H 0.06 1.75 7.79 -52.49 -0.41 1.34 14 8 C 0.03 0.98 5.50 -17.33 -0.10 0.88 14 9 N -0.88 -26.83 13.68 55.53 0.76 -26.07 14 10 Si 1.08 27.40 24.89 -169.99 -4.23 23.17 14 11 H -0.29 -6.89 6.55 56.52 0.37 -6.52 14 12 H -0.27 -6.68 6.65 56.52 0.38 -6.30 14 13 H -0.30 -7.54 7.11 56.52 0.40 -7.13 14 14 C 0.16 3.77 7.99 -152.54 -1.22 2.55 14 15 N -0.87 -17.43 9.02 31.81 0.29 -17.14 14 16 H 0.05 0.69 8.14 -51.93 -0.42 0.27 14 17 H 0.06 0.85 7.39 -51.93 -0.38 0.46 14 18 H 0.07 0.87 8.13 -51.93 -0.42 0.45 14 19 H 0.14 2.46 8.06 -52.48 -0.42 2.04 14 20 H 0.12 3.01 4.41 -52.48 -0.23 2.78 14 21 H 0.27 8.15 8.73 -40.82 -0.36 7.79 14 22 H 0.40 8.12 8.47 -40.82 -0.35 7.78 14 23 H 0.37 6.06 7.96 -40.82 -0.32 5.74 14 LS Contribution 199.24 15.07 3.00 3.00 Total: -1.00 -33.10 199.24 -4.85 -37.96 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.17 Total: 8.69 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -2.12 Total: -19.21 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.66 Total: -53.61 kcal Atomic # 14 Polarization: 27.40 SS G_CDS: -4.23 Total: 23.17 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -33.10 -4.85 -37.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259606230.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.294 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds