Wall clock time and date at job start Mon Mar 30 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37210 * 124.91990 * 2 1 4 4 C 1.34286 * 109.63697 * 180.02562 * 3 2 1 5 5 C 1.46866 * 106.81713 * 0.02562 * 4 3 2 6 6 C 1.40995 * 127.10448 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00297 * 198.93648 * 6 5 4 8 8 C 1.39445 * 120.00291 * 18.93039 * 6 5 4 9 9 N 1.31288 * 120.00646 * 196.08096 * 8 6 5 10 10 Si 1.86799 * 119.99594 * 16.08026 * 8 6 5 11 11 H 1.48497 * 109.47576 * 269.99812 * 10 8 6 12 12 H 1.48503 * 109.47068 * 30.00233 * 10 8 6 13 13 H 1.48509 * 109.47202 * 149.99923 * 10 8 6 14 14 C 1.36042 * 124.91233 * 180.29802 * 2 1 3 15 15 N 1.37691 * 126.21004 * 359.97438 * 14 2 1 16 16 H 1.08998 * 109.47389 * 89.97459 * 1 2 3 17 17 H 1.09000 * 109.47119 * 209.97822 * 1 2 3 18 18 H 1.08999 * 109.46514 * 329.97122 * 1 2 3 19 19 H 1.08004 * 125.18002 * 359.97438 * 3 2 1 20 20 H 1.08006 * 126.59080 * 180.02562 * 4 3 2 21 21 H 0.97001 * 119.99421 * 355.07874 * 9 8 6 22 22 H 0.97002 * 119.99718 * 180.17991 * 15 14 2 23 23 H 0.96992 * 119.99658 * 0.18138 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2504 1.1251 0.0000 4 6 3.5458 0.7711 -0.0006 5 6 3.5851 -0.6970 -0.0016 6 6 4.7320 -1.5172 -0.0029 7 1 4.6565 -2.5508 -0.3071 8 6 5.9639 -0.9939 0.3883 9 7 7.0720 -1.6348 0.0965 10 14 6.0376 0.6189 1.3278 11 1 6.1437 1.7468 0.3676 12 1 4.8046 0.7751 2.1406 13 1 7.2231 0.6172 2.2222 14 6 2.2436 -1.1156 -0.0058 15 7 1.7981 -2.4184 -0.0121 16 1 -0.3634 0.0005 -1.0276 17 1 -0.3633 -0.8902 0.5135 18 1 -0.3632 0.8897 0.5143 19 1 1.8828 2.1406 -0.0004 20 1 4.3955 1.4379 -0.0003 21 1 7.0309 -2.5061 -0.3277 22 1 2.4361 -3.1491 -0.0133 23 1 0.8464 -2.6054 -0.0153 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259606230.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:44 Heat of formation + Delta-G solvation = 24.153961 kcal Electronic energy + Delta-G solvation = -9238.574661 eV Core-core repulsion = 7472.544944 eV Total energy + Delta-G solvation = -1766.029717 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.12785 -35.39289 -34.59929 -33.07723 -29.03406 -27.41249 -24.79131 -21.87304 -20.05801 -19.33283 -18.00517 -16.70749 -15.88418 -15.60047 -15.46355 -14.70353 -13.89026 -13.53915 -13.19524 -12.97195 -12.40121 -12.31060 -11.54981 -11.13866 -10.94982 -10.71382 -9.18452 -8.84728 -7.95628 -5.74542 1.45706 1.54036 1.85591 1.96862 2.28765 2.35473 2.50031 3.54345 3.57170 4.19302 4.52172 4.54685 4.71480 4.90906 5.30597 5.43102 5.87090 5.99269 6.30220 6.38866 6.76602 6.96249 7.27400 7.38362 7.59830 8.51292 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.065661 B = 0.019660 C = 0.015819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.332021 B = 1423.895613 C = 1769.653713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.472 5.472 3 C -0.034 4.034 4 C -0.270 4.270 5 C -0.099 4.099 6 C -0.519 4.519 7 H 0.025 0.975 8 C -0.019 4.019 9 N -0.913 5.913 10 Si 1.125 2.875 11 H -0.269 1.269 12 H -0.262 1.262 13 H -0.302 1.302 14 C 0.177 3.823 15 N -0.857 5.857 16 H 0.071 0.929 17 H 0.079 0.921 18 H 0.101 0.899 19 H 0.187 0.813 20 H 0.120 0.880 21 H 0.258 0.742 22 H 0.403 0.597 23 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 4.722 1.337 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.159 5.159 3 C -0.162 4.162 4 C -0.297 4.297 5 C -0.109 4.109 6 C -0.555 4.555 7 H 0.044 0.956 8 C -0.221 4.221 9 N -0.546 5.546 10 Si 0.950 3.050 11 H -0.195 1.195 12 H -0.187 1.187 13 H -0.230 1.230 14 C -0.030 4.030 15 N -0.408 5.408 16 H 0.089 0.911 17 H 0.098 0.902 18 H 0.120 0.880 19 H 0.204 0.796 20 H 0.137 0.863 21 H 0.067 0.933 22 H 0.232 0.768 23 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.635 5.876 1.956 14.071 hybrid contribution -0.730 -2.147 -0.994 2.476 sum -13.365 3.729 0.963 13.909 Atomic orbital electron populations 1.22020 0.76403 1.04858 1.03178 1.43405 1.06249 1.03865 1.62399 1.21408 0.89445 0.90793 1.14530 1.21819 0.96631 0.94457 1.16764 1.18196 0.90021 0.92061 1.10637 1.19373 0.94765 0.97032 1.44283 0.95627 1.27901 0.91116 1.07641 0.95421 1.70862 1.30021 1.14712 1.39011 0.82991 0.74927 0.71228 0.75843 1.19546 1.18675 1.23030 1.17640 0.88890 0.81387 1.15108 1.40444 1.08721 1.01669 1.89960 0.91075 0.90241 0.88047 0.79584 0.86297 0.93285 0.76788 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 10.84 127.77 1.39 3.20 14 2 N -0.47 -17.82 3.14 -541.85 -1.70 -19.53 14 3 C -0.03 -1.35 11.31 82.95 0.94 -0.41 14 4 C -0.27 -13.21 8.27 23.63 0.20 -13.02 14 5 C -0.10 -5.44 5.63 -19.78 -0.11 -5.55 14 6 C -0.52 -32.14 9.56 23.24 0.22 -31.92 14 7 H 0.03 1.66 7.79 -2.91 -0.02 1.64 14 8 C -0.02 -1.15 5.50 85.07 0.47 -0.69 14 9 N -0.91 -58.59 13.68 21.76 0.30 -58.29 14 10 Si 1.13 56.27 24.89 68.60 1.71 57.98 14 11 H -0.27 -12.43 6.55 99.48 0.65 -11.78 14 12 H -0.26 -12.61 6.65 99.48 0.66 -11.95 14 13 H -0.30 -14.73 7.11 99.48 0.71 -14.02 14 14 C 0.18 8.12 7.99 132.73 1.06 9.18 14 15 N -0.86 -32.62 9.02 -53.29 -0.48 -33.11 14 16 H 0.07 1.48 8.14 -2.39 -0.02 1.47 14 17 H 0.08 1.66 7.39 -2.39 -0.02 1.65 14 18 H 0.10 1.84 8.13 -2.39 -0.02 1.82 14 19 H 0.19 5.45 8.06 -2.91 -0.02 5.42 14 20 H 0.12 5.74 4.41 -2.91 -0.01 5.73 14 21 H 0.26 16.52 8.73 -92.71 -0.81 15.71 14 22 H 0.40 15.98 8.47 -92.71 -0.78 15.19 14 23 H 0.39 11.47 7.96 -92.71 -0.74 10.73 14 Total: -1.00 -74.12 199.24 3.55 -70.56 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.43 Total: 21.60 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 4.16 Total: -39.22 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -1.89 Total: -110.92 kcal Atomic # 14 Polarization: 56.27 SS G_CDS: 1.71 Total: 57.98 kcal Total: -74.12 3.55 -70.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259606230.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.716 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds