Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34438 * 125.46672 * 2 1 4 4 C 1.35088 * 109.46378 * 180.11817 * 3 2 1 5 5 C 1.39714 * 126.11438 * 179.88830 * 4 3 2 6 6 H 1.08009 * 119.99651 * 179.97438 * 5 4 3 7 7 C 1.40105 * 120.00159 * 359.69105 * 5 4 3 8 8 N 1.30824 * 119.99863 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99858 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47093 * 60.00223 * 9 7 5 11 11 H 1.48495 * 109.47002 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47239 * 299.99942 * 9 7 5 13 13 C 1.39487 * 107.76673 * 359.62697 * 4 3 2 14 14 C 1.36365 * 125.46792 * 179.69916 * 2 1 3 15 15 N 1.40306 * 126.39440 * 0.03102 * 14 2 1 16 16 H 1.08999 * 109.47387 * 270.30511 * 1 2 3 17 17 H 1.09003 * 109.47369 * 30.30328 * 1 2 3 18 18 H 1.09003 * 109.47165 * 150.30220 * 1 2 3 19 19 H 0.97000 * 120.00130 * 179.97438 * 8 7 5 20 20 H 1.07999 * 126.75248 * 180.20797 * 13 4 3 21 21 H 0.97002 * 120.00003 * 179.97438 * 15 14 2 22 22 H 0.97008 * 119.99949 * 359.97438 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2870 1.0949 0.0000 4 6 3.5855 0.7225 -0.0026 5 6 4.6882 1.5804 -0.0057 6 1 5.6888 1.1737 -0.0072 7 6 4.4961 2.9682 -0.0127 8 7 3.2841 3.4608 -0.0160 9 14 5.9705 4.1152 -0.0160 10 1 6.7929 3.8607 -1.2261 11 1 5.5016 5.5241 -0.0242 12 1 6.7892 3.8726 1.1989 13 6 3.6285 -0.6717 0.0043 14 6 2.2982 -1.1106 0.0058 15 7 1.8614 -2.4439 0.0122 16 1 -0.3634 0.0055 1.0276 17 1 -0.3634 0.8873 -0.5185 18 1 -0.3633 -0.8927 -0.5091 19 1 3.1511 4.4216 -0.0205 20 1 4.5133 -1.2909 0.0075 21 1 2.5087 -3.1663 0.0157 22 1 0.9120 -2.6433 0.0132 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810473.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = -10.730579 kcal Electronic energy + Delta-G solvation = -9234.033857 eV Core-core repulsion = 7368.772771 eV Total energy + Delta-G solvation = -1865.261087 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.03446 -34.11348 -33.34582 -30.25878 -28.99269 -27.03611 -22.99513 -19.73421 -19.06002 -17.36121 -15.35443 -15.11618 -14.22980 -14.07560 -13.38103 -12.62936 -11.94237 -11.85034 -11.36672 -11.22923 -10.91070 -10.69594 -10.32479 -10.11213 -9.74292 -9.35709 -7.29605 -6.75584 -6.23558 -4.30074 2.97507 3.07407 3.10721 3.70868 3.92866 4.33809 4.93586 5.27379 5.34942 6.25494 6.49723 6.55326 6.73536 7.05936 7.12440 7.40161 7.65504 7.98084 8.09802 8.52867 8.79567 8.89555 8.96760 9.51706 10.23866 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.090878 B = 0.014735 C = 0.012766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.031995 B = 1899.845334 C = 2192.732332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.242 4.242 3 O -0.154 6.154 4 C 0.227 3.773 5 C -0.447 4.447 6 H 0.100 0.900 7 C 0.068 3.932 8 N -0.777 5.777 9 Si 0.922 3.078 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.263 1.263 13 C -0.433 4.433 14 C 0.149 3.851 15 N -0.882 5.882 16 H 0.040 0.960 17 H 0.051 0.949 18 H 0.050 0.950 19 H 0.283 0.717 20 H 0.108 0.892 21 H 0.385 0.615 22 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -2.350 -0.040 2.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.293 4.293 3 O -0.051 6.051 4 C 0.173 3.827 5 C -0.477 4.477 6 H 0.118 0.882 7 C -0.152 4.152 8 N -0.403 5.403 9 Si 0.746 3.254 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.188 1.188 13 C -0.457 4.457 14 C 0.049 3.951 15 N -0.428 5.428 16 H 0.059 0.941 17 H 0.070 0.930 18 H 0.069 0.931 19 H 0.094 0.906 20 H 0.127 0.873 21 H 0.211 0.789 22 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.123 -1.723 -0.042 2.057 hybrid contribution 0.595 -0.063 0.001 0.598 sum -0.528 -1.786 -0.041 1.863 Atomic orbital electron populations 1.19515 0.88911 1.00406 0.99688 1.20804 0.92040 0.84411 1.32094 1.84408 1.15499 1.30327 1.74825 1.19284 0.81944 0.90862 0.90580 1.18648 0.92276 0.89808 1.46979 0.88177 1.26110 0.97331 0.99368 0.92434 1.69800 1.22164 1.14850 1.33527 0.86144 0.80986 0.78296 0.79997 1.18767 1.20209 1.18754 1.20774 0.93887 0.93920 1.37111 1.17380 0.93111 0.83862 1.00720 1.41458 1.07705 1.03468 1.90186 0.94092 0.92975 0.93115 0.90608 0.87337 0.78878 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.59 10.23 36.00 0.37 -0.22 14 2 C -0.24 -6.38 7.35 -34.99 -0.26 -6.64 14 3 O -0.15 -4.64 8.96 3.13 0.03 -4.61 14 4 C 0.23 6.74 6.79 -38.57 -0.26 6.48 14 5 C -0.45 -12.56 9.31 -38.33 -0.36 -12.92 14 6 H 0.10 2.61 7.85 -52.48 -0.41 2.20 14 7 C 0.07 1.79 5.50 -17.28 -0.10 1.69 14 8 N -0.78 -21.52 12.00 55.56 0.67 -20.86 14 9 Si 0.92 19.07 29.56 -169.99 -5.03 14.04 14 10 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 12 H -0.26 -5.32 7.11 56.52 0.40 -4.91 14 13 C -0.43 -11.92 10.95 -38.42 -0.42 -12.34 14 14 C 0.15 3.78 7.25 -83.96 -0.61 3.17 14 15 N -0.88 -17.17 9.17 32.29 0.30 -16.88 14 16 H 0.04 0.79 8.14 -51.93 -0.42 0.36 14 17 H 0.05 1.05 8.14 -51.93 -0.42 0.63 14 18 H 0.05 0.90 7.57 -51.93 -0.39 0.50 14 19 H 0.28 7.04 8.30 -40.82 -0.34 6.70 14 20 H 0.11 2.80 8.06 -52.49 -0.42 2.37 14 21 H 0.39 6.61 8.96 -40.82 -0.37 6.24 14 22 H 0.38 6.38 8.18 -40.82 -0.33 6.05 14 LS Contribution 203.58 15.07 3.07 3.07 Total: -1.00 -31.43 203.58 -4.51 -35.93 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -1.91 Total: 10.08 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.63 Total: -20.78 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.96 Total: -37.73 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.03 Total: -4.61 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -31.43 -4.51 -35.93 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810473.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.204 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds