Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99824 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99833 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00079 * 3 2 1 7 7 C 1.40467 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.39935 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.39230 * 126.29657 * 179.97438 * 9 7 2 11 11 C 1.40770 * 107.48756 * 179.97438 * 10 9 7 12 12 C 1.47758 * 125.86891 * 180.02562 * 11 10 9 13 13 O 1.20819 * 120.00447 * 179.97438 * 12 11 10 14 14 N 1.31611 * 108.26626 * 359.97438 * 11 10 9 15 15 O 1.35080 * 126.29991 * 359.68687 * 9 7 2 16 16 H 0.96991 * 120.00457 * 0.02562 * 1 2 3 17 17 H 1.07992 * 126.25707 * 359.96409 * 10 9 7 18 18 H 1.08005 * 119.99527 * 359.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.4870 2.0464 -1.4001 5 1 1.4369 2.6527 0.7000 6 1 3.5371 1.4403 0.7000 7 6 2.0080 -1.2164 0.0005 8 1 3.0880 -1.2164 0.0001 9 6 1.3083 -2.4283 0.0005 10 6 1.8681 -3.7032 0.0005 11 6 0.8088 -4.6303 0.0011 12 6 0.9458 -6.1015 0.0019 13 8 -0.0399 -6.8001 0.0028 14 7 -0.3247 -3.9615 0.0020 15 8 -0.0343 -2.5766 0.0060 16 1 -0.4850 0.8399 -0.0004 17 1 2.9222 -3.9379 0.0000 18 1 1.9273 -6.5523 0.0016 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827519.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = -30.773597 kcal Electronic energy + Delta-G solvation = -8814.174905 eV Core-core repulsion = 6812.211593 eV Total energy + Delta-G solvation = -2001.963312 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 167.037 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.57373 -39.86136 -35.92528 -33.69677 -31.64862 -27.70437 -26.27275 -22.30002 -21.15950 -19.39753 -17.31916 -17.15972 -16.17869 -16.03884 -15.80002 -15.04026 -14.62463 -14.05073 -13.23899 -13.05080 -12.69013 -11.96862 -11.57943 -11.55045 -11.18658 -11.04017 -9.76538 -8.97447 -6.98435 0.15033 1.10421 1.39497 1.60147 1.71409 2.11950 2.34380 2.53624 3.03934 3.52330 4.33529 4.48691 4.88395 5.11668 5.15369 5.63966 5.92974 6.22307 6.37990 6.42219 7.16001 8.02596 Molecular weight = 167.04amu Principal moments of inertia in cm(-1) A = 0.145843 B = 0.012510 C = 0.011569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 191.941474 B = 2237.618895 C = 2419.717808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.015 3.985 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.239 1.239 7 C -0.433 4.433 8 H 0.136 0.864 9 C 0.183 3.817 10 C -0.425 4.425 11 C 0.001 3.999 12 C 0.440 3.560 13 O -0.491 6.491 14 N -0.446 5.446 15 O -0.113 6.113 16 H 0.304 0.696 17 H 0.163 0.837 18 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 1.535 0.005 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.206 4.206 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.161 1.161 7 C -0.463 4.463 8 H 0.154 0.846 9 C 0.123 3.877 10 C -0.457 4.457 11 C -0.157 4.157 12 C 0.297 3.703 13 O -0.361 6.361 14 N -0.208 5.208 15 O -0.120 6.120 16 H 0.115 0.885 17 H 0.181 0.819 18 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.298 1.123 0.011 6.398 hybrid contribution 0.601 0.737 -0.014 0.951 sum 6.899 1.860 -0.003 7.145 Atomic orbital electron populations 1.69771 1.10275 1.32897 1.28630 1.27675 0.95806 1.06808 0.90336 0.84628 0.78897 0.72565 0.80238 1.17825 1.19101 1.16150 1.19813 0.96582 0.87622 1.42266 0.84645 1.21019 0.82472 0.96365 0.87795 1.22291 0.99642 0.88472 1.35298 1.24429 0.93204 0.99886 0.98196 1.24512 0.95753 0.82662 0.67413 1.90356 1.45759 1.64402 1.35585 1.80337 1.20385 0.85575 1.34467 1.89289 1.22643 1.20698 1.79358 0.88467 0.81902 0.78840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.07 12.02 21.92 0.26 -40.80 13 2 C 0.02 0.72 5.50 85.43 0.47 1.19 13 3 Si 1.02 33.03 29.56 68.60 2.03 35.06 13 4 H -0.25 -7.85 7.11 99.48 0.71 -7.15 13 5 H -0.27 -8.36 7.11 99.48 0.71 -7.65 13 6 H -0.24 -7.07 7.11 99.48 0.71 -6.36 13 7 C -0.43 -21.43 9.35 23.22 0.22 -21.21 13 8 H 0.14 5.77 7.85 -2.91 -0.02 5.75 13 9 C 0.18 10.10 6.87 22.92 0.16 10.26 13 10 C -0.43 -20.28 10.82 23.13 0.25 -20.03 13 11 C 0.00 0.07 7.07 42.31 0.30 0.37 13 12 C 0.44 15.90 11.72 70.34 0.82 16.73 13 13 O -0.49 -21.18 17.88 -1.63 -0.03 -21.21 13 14 N -0.45 -26.20 12.93 -48.71 -0.63 -26.83 13 15 O -0.11 -7.03 10.46 26.87 0.28 -6.75 13 16 H 0.30 13.86 8.29 -92.71 -0.77 13.10 13 17 H 0.16 6.29 8.06 -2.91 -0.02 6.27 13 18 H 0.20 4.06 8.06 -2.91 -0.02 4.04 13 Total: -1.00 -70.65 187.77 5.41 -65.24 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.28 Total: 7.99 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 2.22 Total: -12.69 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -0.37 Total: -67.64 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: 0.25 Total: -27.96 kcal Atomic # 14 Polarization: 33.03 SS G_CDS: 2.03 Total: 35.06 kcal Total: -70.65 5.41 -65.24 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827519.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.465 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds