Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48499 * 109.47065 * 270.00091 * 3 2 1 5 5 H 1.48501 * 109.47041 * 29.99393 * 3 2 1 6 6 H 1.48493 * 109.47189 * 149.99947 * 3 2 1 7 7 C 1.37880 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00047 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47055 * 299.99958 * 9 7 2 11 11 N 1.46899 * 109.47340 * 60.00259 * 9 7 2 12 12 C 1.50702 * 109.47127 * 180.02562 * 9 7 2 13 13 C 1.39870 * 125.90317 * 124.99647 * 12 9 7 14 14 C 1.35315 * 107.92072 * 179.97438 * 13 12 9 15 15 N 1.34939 * 107.74580 * 0.02562 * 14 13 12 16 16 H 0.97006 * 126.03490 * 179.97438 * 15 14 13 17 17 N 1.30839 * 125.89375 * 305.00186 * 12 9 7 18 18 H 0.96993 * 119.99969 * 0.02562 * 1 2 3 19 19 H 1.00906 * 110.99840 * 296.04421 * 11 9 7 20 20 H 1.00902 * 111.00040 * 59.99511 * 11 9 7 21 21 H 1.07999 * 126.03520 * 0.27153 * 13 12 9 22 22 H 1.07999 * 126.12207 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6446 0.0018 13 6 2.2688 -4.6899 0.9304 14 6 3.2871 -5.5129 0.5890 15 7 3.8727 -5.0062 -0.5160 16 1 4.6315 -5.3869 -0.9854 17 7 3.1916 -3.8330 -0.8656 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3004 -1.8578 -1.1911 20 1 0.9654 -2.5260 -2.0381 21 1 1.6004 -4.8199 1.7687 22 1 3.5789 -6.4140 1.1081 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259828817.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = 42.384518 kcal Electronic energy + Delta-G solvation = -9200.013260 eV Core-core repulsion = 7369.348168 eV Total energy + Delta-G solvation = -1830.665092 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.78427 -36.65306 -33.52575 -31.42362 -30.62978 -28.02022 -24.84683 -21.99366 -20.30034 -18.87813 -18.44470 -16.73543 -15.91798 -15.37866 -14.86128 -14.54432 -14.23343 -13.50154 -13.18724 -12.81783 -12.69033 -11.95123 -11.84969 -11.31235 -10.69719 -10.14933 -9.46657 -9.20081 -8.11992 -6.34859 1.21892 1.38168 1.38981 1.49974 2.10084 2.31291 2.41226 3.07405 4.11569 4.25587 4.64705 4.77783 5.07816 5.21706 5.46277 5.65978 5.89270 6.08627 6.62298 6.75769 6.89407 7.06273 7.11419 7.39404 8.84578 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.073791 B = 0.014750 C = 0.013481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.358596 B = 1897.829089 C = 2076.496029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.555 4.555 8 H 0.040 0.960 9 C 0.279 3.721 10 H 0.028 0.972 11 N -0.838 5.838 12 C 0.097 3.903 13 C -0.307 4.307 14 C 0.075 3.925 15 N -0.482 5.482 16 H 0.448 0.552 17 N -0.333 5.333 18 H 0.269 0.731 19 H 0.348 0.652 20 H 0.316 0.684 21 H 0.148 0.852 22 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -7.791 1.097 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.595 4.595 8 H 0.058 0.942 9 C 0.167 3.833 10 H 0.046 0.954 11 N -0.367 5.367 12 C -0.070 4.070 13 C -0.336 4.336 14 C -0.073 4.073 15 N -0.191 5.191 16 H 0.294 0.706 17 N -0.157 5.157 18 H 0.078 0.922 19 H 0.163 0.837 20 H 0.125 0.875 21 H 0.166 0.834 22 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.999 -7.965 0.356 9.978 hybrid contribution 0.588 1.454 0.358 1.609 sum 6.588 -6.512 0.714 9.290 Atomic orbital electron populations 1.69827 1.06755 1.28086 1.50866 1.25726 0.95848 1.02269 0.94002 0.85500 0.78447 0.79072 0.78197 1.20163 1.20074 1.20157 1.21975 0.93091 0.92550 1.51916 0.94154 1.17282 0.87781 0.87260 0.91012 0.95406 1.59399 1.18102 1.55259 1.03914 1.22770 0.94592 0.96506 0.93112 1.21774 1.06519 0.98991 1.06360 1.23115 0.94040 1.00255 0.89915 1.46423 1.28948 1.19952 1.23800 0.70616 1.77235 1.10971 1.02471 1.25056 0.92152 0.83732 0.87485 0.83424 0.75695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 11.54 21.45 0.25 -51.81 14 2 C 0.02 1.21 5.38 84.65 0.46 1.67 14 3 Si 0.96 44.66 29.54 68.60 2.03 46.68 14 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 14 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 14 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 14 7 C -0.56 -32.16 8.68 25.60 0.22 -31.94 14 8 H 0.04 2.42 7.74 -2.91 -0.02 2.39 14 9 C 0.28 15.15 3.20 43.42 0.14 15.29 14 10 H 0.03 1.63 8.12 -2.39 -0.02 1.61 14 11 N -0.84 -43.82 9.18 -174.96 -1.61 -45.42 14 12 C 0.10 4.64 5.98 43.10 0.26 4.90 14 13 C -0.31 -11.78 10.72 21.99 0.24 -11.55 14 14 C 0.07 2.11 11.99 83.54 1.00 3.12 14 15 N -0.48 -15.23 7.36 -57.60 -0.42 -15.65 14 16 H 0.45 10.00 8.96 -213.32 -1.91 8.08 14 17 N -0.33 -14.96 12.66 -47.38 -0.60 -15.56 14 18 H 0.27 14.42 8.31 -92.71 -0.77 13.65 14 19 H 0.35 18.93 7.08 -89.69 -0.63 18.30 14 20 H 0.32 16.40 8.98 -89.69 -0.81 15.60 14 21 H 0.15 5.19 8.06 -2.91 -0.02 5.17 14 22 H 0.23 3.44 8.06 -2.91 -0.02 3.42 14 Total: -1.00 -67.41 202.87 -0.14 -67.54 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -2.09 Total: 32.73 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 2.31 Total: -18.51 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -2.38 Total: -128.45 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.41 -0.14 -67.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828817.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.926 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds