Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99582 * 2 1 4 4 H 1.48490 * 109.47476 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47407 * 30.00314 * 3 2 1 6 6 H 1.48504 * 109.46876 * 150.00085 * 3 2 1 7 7 C 1.37872 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99551 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00371 * 179.97438 * 7 2 1 10 10 H 1.09009 * 109.46773 * 59.99586 * 9 7 2 11 11 N 1.46897 * 109.47256 * 300.00295 * 9 7 2 12 12 C 1.50692 * 109.47606 * 179.97438 * 9 7 2 13 13 C 1.39874 * 125.89699 * 124.99900 * 12 9 7 14 14 C 1.35317 * 107.91746 * 180.02562 * 13 12 9 15 15 N 1.34947 * 107.74962 * 359.97438 * 14 13 12 16 16 H 0.97001 * 126.03556 * 179.97438 * 15 14 13 17 17 N 1.30836 * 125.90192 * 305.30729 * 12 9 7 18 18 H 0.96997 * 120.00147 * 359.97438 * 1 2 3 19 19 H 1.00910 * 110.99778 * 299.99723 * 11 9 7 20 20 H 1.00900 * 111.00103 * 63.94283 * 11 9 7 21 21 H 1.07999 * 126.03656 * 0.02562 * 13 12 9 22 22 H 1.08006 * 126.12532 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8752 -0.6803 0.8889 11 7 4.0008 -0.5012 -1.2005 12 6 4.0139 -2.6147 -0.0010 13 6 4.8997 -3.1714 -0.9294 14 6 5.1027 -4.4648 -0.5874 15 7 4.3717 -4.7175 0.5185 16 1 4.3219 -5.5646 0.9884 17 7 3.6926 -3.5420 0.8642 18 1 -0.4850 0.8400 0.0004 19 1 3.6769 -0.9586 -2.0397 20 1 3.7312 0.4711 -1.1917 21 1 5.3432 -2.6594 -1.7705 22 1 5.7368 -5.1687 -1.1060 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259828818.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = 79.440815 kcal Electronic energy + Delta-G solvation = -9248.126547 eV Core-core repulsion = 7419.068337 eV Total energy + Delta-G solvation = -1829.058210 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.36310 -35.01057 -31.84921 -30.21947 -29.18667 -26.09877 -22.87562 -20.66239 -18.52789 -17.48667 -16.94239 -15.31146 -14.27969 -13.69219 -13.08665 -12.98349 -12.64300 -12.30124 -11.66679 -10.83162 -10.76591 -10.30804 -9.77742 -9.50977 -8.76944 -8.54873 -8.03330 -7.49801 -6.14501 -4.16651 2.58491 3.18691 3.33304 3.34048 3.55479 3.66651 4.30178 5.12864 5.34849 5.51819 6.02590 6.25012 6.50925 6.67183 7.02703 7.40851 7.52965 7.89349 8.09868 8.34174 8.46813 8.66761 8.96192 9.43873 10.98649 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.081184 B = 0.015938 C = 0.014234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.813539 B = 1756.417368 C = 1966.701733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.258 1.258 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.247 3.753 10 H 0.058 0.942 11 N -0.846 5.846 12 C 0.125 3.875 13 C -0.256 4.256 14 C 0.029 3.971 15 N -0.497 5.497 16 H 0.429 0.571 17 N -0.289 5.289 18 H 0.265 0.735 19 H 0.335 0.665 20 H 0.320 0.680 21 H 0.146 0.854 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.163 -4.849 -2.016 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.136 3.864 10 H 0.075 0.925 11 N -0.380 5.380 12 C -0.043 4.043 13 C -0.286 4.286 14 C -0.117 4.117 15 N -0.204 5.204 16 H 0.271 0.729 17 N -0.112 5.112 18 H 0.075 0.925 19 H 0.146 0.854 20 H 0.137 0.863 21 H 0.163 0.837 22 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.071 -5.182 -0.710 10.471 hybrid contribution -0.257 0.694 -0.778 1.074 sum 8.815 -4.488 -1.488 10.002 Atomic orbital electron populations 1.69899 1.06197 1.27042 1.49816 1.25035 0.94895 0.98958 0.94363 0.87015 0.80424 0.83865 0.78556 1.20087 1.21760 1.18310 1.21626 0.89416 0.95108 1.51551 0.90403 1.17774 0.93543 0.84376 0.90752 0.92476 1.59522 1.66992 1.05555 1.05895 1.22514 0.93473 0.96333 0.92003 1.21444 1.07638 0.93966 1.05516 1.22427 0.99222 0.98239 0.91823 1.46425 1.37888 1.12427 1.23688 0.72881 1.77417 1.17997 0.91342 1.24457 0.92470 0.85379 0.86349 0.83662 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.96 55.43 0.77 -26.60 14 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 14 3 Si 0.87 21.11 24.61 -169.99 -4.18 16.92 14 4 H -0.27 -6.28 7.01 56.52 0.40 -5.88 14 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 14 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 14 7 C -0.54 -15.50 9.26 -34.44 -0.32 -15.81 14 8 H 0.08 2.52 7.98 -52.48 -0.42 2.10 14 9 C 0.25 6.15 2.78 -70.02 -0.19 5.96 14 10 H 0.06 1.49 7.20 -51.92 -0.37 1.11 14 11 N -0.85 -18.74 8.49 -6.65 -0.06 -18.80 14 12 C 0.12 2.87 6.37 -82.41 -0.52 2.34 14 13 C -0.26 -4.84 9.95 -40.01 -0.40 -5.24 14 14 C 0.03 0.46 11.99 -17.22 -0.21 0.25 14 15 N -0.50 -8.39 7.36 30.45 0.22 -8.17 14 16 H 0.43 5.43 8.96 -182.61 -1.64 3.79 14 17 N -0.29 -6.55 12.66 33.67 0.43 -6.12 14 18 H 0.27 7.59 8.31 -40.82 -0.34 7.25 14 19 H 0.33 7.06 8.78 -39.29 -0.34 6.71 14 20 H 0.32 7.16 4.30 -39.29 -0.17 6.99 14 21 H 0.15 2.51 7.84 -52.49 -0.41 2.10 14 22 H 0.16 1.72 8.06 -52.48 -0.42 1.30 14 LS Contribution 194.99 15.07 2.94 2.94 Total: -1.00 -32.74 194.99 -4.57 -37.31 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -2.95 Total: 13.09 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.74 Total: -10.57 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 1.37 Total: -59.69 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.18 Total: 16.92 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -32.74 -4.57 -37.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828818.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.748 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds