Wall clock time and date at job start Mon Mar 30 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47586 * 2 1 4 4 C 1.50698 * 109.47538 * 120.00899 * 2 1 3 5 5 H 1.08004 * 120.00095 * 29.74358 * 4 2 1 6 6 C 1.37880 * 120.00237 * 209.75197 * 4 2 1 7 7 N 1.31517 * 119.99828 * 353.27387 * 6 4 2 8 8 Si 1.86798 * 120.00163 * 173.27662 * 6 4 2 9 9 H 1.48504 * 109.46852 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47169 * 299.99870 * 8 6 4 11 11 H 1.48504 * 109.46911 * 60.00029 * 8 6 4 12 12 C 1.50708 * 109.46896 * 240.00293 * 2 1 3 13 13 C 1.41386 * 128.00301 * 119.99761 * 12 2 1 14 14 N 1.30172 * 106.39076 * 179.97438 * 13 12 2 15 15 O 1.20919 * 111.60882 * 0.02562 * 14 13 12 16 16 C 1.34045 * 111.56623 * 359.75892 * 15 14 13 17 17 H 1.08998 * 109.47431 * 64.07549 * 1 2 3 18 18 H 1.09004 * 109.47341 * 184.07879 * 1 2 3 19 19 H 1.09006 * 109.46820 * 304.07333 * 1 2 3 20 20 H 0.97010 * 119.99857 * 354.65276 * 7 6 4 21 21 H 1.08000 * 126.80329 * 359.94656 * 13 12 2 22 22 H 1.08001 * 126.77552 * 180.28495 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 1.4467 -1.5025 1.6736 6 6 3.2395 -0.3497 1.7902 7 7 4.0140 0.5200 1.1791 8 14 3.7750 -1.0960 3.4167 9 1 5.1010 -0.5481 3.8001 10 1 2.7789 -0.7625 4.4662 11 1 3.8713 -2.5713 3.2765 12 6 2.0322 -0.7104 -1.2306 13 6 2.8475 -0.1923 -2.2630 14 7 3.0253 -1.1625 -3.1125 15 8 2.4552 -2.1701 -2.7635 16 6 1.8111 -1.9943 -1.6011 17 1 -0.3634 0.4493 -0.9242 18 1 -0.3634 -1.0251 0.0731 19 1 -0.3633 0.5758 0.8513 20 1 3.7737 0.8489 0.2987 21 1 3.2438 0.8099 -2.3331 22 1 1.2297 -2.7307 -1.0662 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259842817.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:16 Heat of formation + Delta-G solvation = 43.475623 kcal Electronic energy + Delta-G solvation = -9372.134623 eV Core-core repulsion = 7509.224094 eV Total energy + Delta-G solvation = -1862.910529 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.00150 -35.44699 -32.40057 -31.26998 -29.38516 -24.68178 -22.99814 -21.97569 -19.72852 -17.19178 -16.71621 -16.50728 -14.25943 -13.79888 -13.56677 -12.76626 -12.19553 -12.01975 -11.16245 -11.07792 -10.83706 -10.41646 -10.16421 -9.80178 -9.43334 -8.90856 -8.54599 -8.06885 -6.45166 -4.19151 2.39888 3.27138 3.40045 3.41953 3.59653 4.15626 4.47096 5.17566 5.31184 5.70147 6.02880 6.26528 6.40163 6.48069 6.58293 6.60603 6.98117 7.26494 7.33003 8.06753 8.32883 8.75286 9.07556 9.54192 10.92816 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.056970 B = 0.017256 C = 0.015805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.367569 B = 1622.228466 C = 1771.173314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.083 3.917 3 H 0.045 0.955 4 C -0.592 4.592 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 1.066 2.934 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.287 1.287 12 C -0.140 4.140 13 C -0.021 4.021 14 N -0.388 5.388 15 O 0.078 5.922 16 C -0.092 4.092 17 H 0.027 0.973 18 H 0.041 0.959 19 H 0.049 0.951 20 H 0.271 0.729 21 H 0.177 0.823 22 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -2.528 -2.049 5.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 H 0.063 0.937 4 C -0.629 4.629 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.538 5.538 8 Si 0.894 3.106 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.214 1.214 12 C -0.145 4.145 13 C -0.199 4.199 14 N -0.093 5.093 15 O 0.012 5.988 16 C -0.172 4.172 17 H 0.046 0.954 18 H 0.060 0.940 19 H 0.068 0.932 20 H 0.082 0.918 21 H 0.194 0.806 22 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.547 -2.583 -2.051 4.167 hybrid contribution -1.419 0.200 -0.362 1.478 sum -3.965 -2.383 -2.412 5.217 Atomic orbital electron populations 1.21730 0.97362 1.00164 0.98948 1.17473 0.91588 0.95956 0.88591 0.93673 1.21881 1.07447 1.22601 1.11021 0.92852 1.25887 0.93149 0.95333 1.03904 1.70790 1.38590 1.28681 1.15746 0.83588 0.76399 0.75730 0.74903 1.20756 1.21255 1.21389 1.22521 0.99302 0.94726 0.97924 1.24970 1.01658 1.00360 0.92912 1.73686 1.16446 0.94921 1.24273 1.84641 1.49404 1.31109 1.33656 1.25426 1.03204 0.99353 0.89266 0.95383 0.93994 0.93226 0.91787 0.80573 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.07 37.15 0.34 -2.17 14 2 C 0.08 1.99 2.39 -92.93 -0.22 1.77 14 3 H 0.05 1.16 6.91 -51.93 -0.36 0.80 14 4 C -0.59 -15.72 8.19 -34.44 -0.28 -16.00 14 5 H 0.05 1.39 7.82 -52.48 -0.41 0.98 14 6 C 0.02 0.63 5.45 -17.82 -0.10 0.53 14 7 N -0.90 -26.54 13.55 55.43 0.75 -25.79 14 8 Si 1.07 24.46 29.91 -169.99 -5.08 19.37 14 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 10 H -0.29 -6.24 7.11 56.52 0.40 -5.83 14 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 14 12 C -0.14 -3.17 4.82 -104.42 -0.50 -3.67 14 13 C -0.02 -0.46 12.16 -17.06 -0.21 -0.67 14 14 N -0.39 -8.43 12.07 30.36 0.37 -8.06 14 15 O 0.08 1.60 11.20 17.16 0.19 1.79 14 16 C -0.09 -1.86 12.01 29.74 0.36 -1.51 14 17 H 0.03 0.50 8.14 -51.93 -0.42 0.08 14 18 H 0.04 0.79 8.14 -51.93 -0.42 0.37 14 19 H 0.05 0.97 8.14 -51.93 -0.42 0.55 14 20 H 0.27 7.85 6.75 -40.82 -0.28 7.57 14 21 H 0.18 3.50 8.06 -52.49 -0.42 3.08 14 22 H 0.20 3.48 8.06 -52.49 -0.42 3.06 14 LS Contribution 204.16 15.07 3.08 3.08 Total: -1.00 -29.51 204.16 -3.27 -32.78 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -1.95 Total: -1.45 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.62 Total: -21.72 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 1.12 Total: -33.85 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.19 Total: 1.79 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -29.51 -3.27 -32.78 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259842817.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.252 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds