Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00570 * 2 1 4 4 H 1.48502 * 109.47527 * 270.00536 * 3 2 1 5 5 H 1.48510 * 109.47036 * 30.00474 * 3 2 1 6 6 H 1.48502 * 109.47448 * 149.99878 * 3 2 1 7 7 C 1.37879 * 119.99353 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00283 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99657 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46724 * 179.97438 * 10 9 7 12 12 C 1.35450 * 126.77526 * 90.00396 * 11 10 9 13 13 C 1.41375 * 103.98779 * 179.97438 * 12 11 10 14 14 N 1.30174 * 106.39554 * 359.97438 * 13 12 11 15 15 O 1.20925 * 111.60250 * 0.02562 * 14 13 12 16 16 H 0.97005 * 119.99204 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47074 * 60.00189 * 9 7 2 18 18 H 1.09000 * 109.47098 * 300.00041 * 9 7 2 19 19 H 1.08998 * 109.47151 * 60.00285 * 10 9 7 20 20 H 1.09000 * 109.47407 * 299.99902 * 10 9 7 21 21 H 1.08002 * 128.01009 * 359.97438 * 12 11 10 22 22 H 1.07997 * 126.80869 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1295 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6368 -0.0010 11 6 5.5283 -2.6369 -0.0022 12 6 6.3401 -2.6366 1.0821 13 6 7.6431 -2.6374 0.5335 14 7 7.4971 -2.6387 -0.7601 15 8 6.3300 -2.6382 -1.0764 16 1 -0.4849 0.8402 0.0004 17 1 3.8752 -0.6807 0.8888 18 1 3.8745 -0.6802 -0.8911 19 1 3.6576 -3.1508 -0.8907 20 1 3.6583 -3.1504 0.8892 21 1 6.0575 -2.6359 2.1245 22 1 8.5750 -2.6379 1.0793 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259843962.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = 27.782847 kcal Electronic energy + Delta-G solvation = -9000.289242 eV Core-core repulsion = 7136.698223 eV Total energy + Delta-G solvation = -1863.591019 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.77840 -36.38675 -34.73518 -34.15462 -31.44773 -27.40990 -24.30786 -23.33299 -21.86372 -19.16821 -18.37802 -17.83723 -16.33632 -15.85299 -15.37564 -14.75834 -14.20962 -14.00749 -13.41732 -13.00461 -12.44913 -12.22956 -11.85909 -11.67071 -11.41118 -11.37917 -10.76964 -10.18024 -8.29427 -6.33842 0.56804 1.37219 1.38336 1.43710 1.49344 2.23154 2.35850 3.06330 3.54965 3.76705 4.22351 4.39876 4.55936 4.63116 4.83634 4.96027 5.23120 5.33740 5.45508 5.61443 6.24973 6.73991 7.30942 7.31359 8.86655 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.082464 B = 0.012066 C = 0.011311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.462073 B = 2319.959302 C = 2474.786543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.045 0.955 9 C -0.006 4.006 10 C -0.023 4.023 11 C -0.020 4.020 12 C -0.244 4.244 13 C 0.001 3.999 14 N -0.407 5.407 15 O 0.064 5.936 16 H 0.267 0.733 17 H 0.027 0.973 18 H 0.014 0.986 19 H 0.080 0.920 20 H 0.106 0.894 21 H 0.195 0.805 22 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.575 -2.948 3.107 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.063 0.937 9 C -0.043 4.043 10 C -0.061 4.061 11 C -0.083 4.083 12 C -0.265 4.265 13 C -0.178 4.178 14 N -0.116 5.116 15 O 0.004 5.996 16 H 0.076 0.924 17 H 0.046 0.954 18 H 0.032 0.968 19 H 0.099 0.901 20 H 0.124 0.876 21 H 0.213 0.787 22 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 13.258 -2.848 2.051 13.715 hybrid contribution -0.504 0.742 0.656 1.112 sum 12.754 -2.105 2.707 13.207 Atomic orbital electron populations 1.70046 1.08123 1.28169 1.52378 1.25901 0.95528 1.03203 0.94175 0.85748 0.79535 0.78882 0.79032 1.19645 1.20803 1.17235 1.21380 0.91309 0.93628 1.50544 0.93666 1.19506 0.94387 0.93429 0.97011 1.20116 0.82152 0.99165 1.04716 1.25147 0.96641 1.00247 0.86265 1.22964 0.91453 1.10246 1.01849 1.25654 1.01396 1.00978 0.89756 1.73841 0.97508 1.21523 1.18699 1.84771 1.11725 1.68560 1.34541 0.92417 0.95442 0.96777 0.90126 0.87568 0.78749 0.75744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 13.96 21.45 0.30 -57.80 14 2 C 0.01 0.53 5.47 84.66 0.46 1.00 14 3 Si 0.94 43.65 27.47 68.60 1.88 45.53 14 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 14 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 14 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 14 7 C -0.53 -29.30 9.66 25.60 0.25 -29.06 14 8 H 0.05 2.69 7.99 -2.91 -0.02 2.67 14 9 C -0.01 -0.25 4.02 29.85 0.12 -0.13 14 10 C -0.02 -0.84 5.72 29.85 0.17 -0.67 14 11 C -0.02 -0.65 6.74 25.04 0.17 -0.48 14 12 C -0.24 -6.58 11.09 22.40 0.25 -6.33 14 13 C 0.00 0.02 12.17 85.71 1.04 1.06 14 14 N -0.41 -13.29 12.07 -59.27 -0.72 -14.00 14 15 O 0.06 2.25 11.20 71.69 0.80 3.06 14 16 H 0.27 15.31 8.31 -92.70 -0.77 14.54 14 17 H 0.03 1.20 7.20 -2.39 -0.02 1.18 14 18 H 0.01 0.63 7.57 -2.39 -0.02 0.62 14 19 H 0.08 2.89 8.14 -2.39 -0.02 2.87 14 20 H 0.11 3.50 8.14 -2.39 -0.02 3.48 14 21 H 0.20 4.09 8.06 -2.91 -0.02 4.07 14 22 H 0.23 3.64 8.06 -2.91 -0.02 3.61 14 Total: -1.00 -64.37 203.80 5.88 -58.48 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.15 Total: -0.65 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.46 Total: -34.61 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -0.42 Total: -71.80 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.80 Total: 3.06 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -64.37 5.88 -58.48 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259843962.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.265 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds