Wall clock time and date at job start Mon Mar 30 2020 02:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 11 11 N 1.46895 * 109.47061 * 60.00216 * 9 7 2 12 12 C 1.50707 * 109.47014 * 179.97438 * 9 7 2 13 13 C 1.34665 * 126.59292 * 274.69063 * 12 9 7 14 14 N 1.34126 * 108.01745 * 179.87080 * 13 12 9 15 15 C 1.30495 * 109.25895 * 0.39992 * 14 13 12 16 16 N 1.35040 * 108.70231 * 359.75225 * 15 14 13 17 17 H 0.97001 * 126.40338 * 180.02562 * 16 15 14 18 18 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 19 19 H 1.00902 * 111.00742 * 59.99695 * 11 9 7 20 20 H 1.00901 * 111.00236 * 183.95074 * 11 9 7 21 21 H 1.07997 * 125.98968 * 0.02562 * 13 12 9 22 22 H 1.07995 * 125.64956 * 179.73393 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8902 11 7 0.4070 -2.5772 -1.1992 12 6 2.2304 -3.6447 0.0005 13 6 2.8192 -4.1974 -1.0771 14 7 3.6210 -5.1846 -0.6510 15 6 3.5449 -5.2702 0.6489 16 7 2.6877 -4.3271 1.0955 17 1 2.4423 -4.1634 2.0196 18 1 -0.4850 0.8401 0.0004 19 1 0.9653 -2.5260 -2.0382 20 1 -0.1570 -3.4138 -1.1908 21 1 2.6735 -3.8967 -2.1040 22 1 4.0786 -5.9782 1.2654 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259845556.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:09 Heat of formation + Delta-G solvation = 54.582387 kcal Electronic energy + Delta-G solvation = -9240.854092 eV Core-core repulsion = 7410.717940 eV Total energy + Delta-G solvation = -1830.136153 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.25340 -34.60432 -31.76396 -31.53019 -28.01601 -25.94441 -22.46782 -20.82107 -19.72626 -17.19464 -16.46706 -14.61011 -14.28370 -14.06047 -13.55705 -12.90970 -12.75777 -12.32411 -11.36790 -10.85837 -10.81944 -10.10343 -9.51408 -9.31433 -9.17641 -8.49415 -7.62564 -7.19364 -5.94993 -4.10899 2.85821 3.32113 3.37036 3.40457 3.84086 3.88015 4.44940 5.24663 5.30104 5.86773 6.17928 6.22246 6.42561 6.71302 7.35932 7.46483 7.84324 8.02361 8.12362 8.52771 8.73030 8.92964 9.05068 9.58622 11.09108 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.072333 B = 0.014876 C = 0.013735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.008137 B = 1881.816426 C = 2038.112364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.085 3.915 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.287 3.713 10 H 0.043 0.957 11 N -0.800 5.800 12 C 0.007 3.993 13 C -0.064 4.064 14 N -0.498 5.498 15 C 0.141 3.859 16 N -0.568 5.568 17 H 0.414 0.586 18 H 0.258 0.742 19 H 0.323 0.677 20 H 0.300 0.700 21 H 0.158 0.842 22 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 -5.390 2.361 6.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.175 3.825 10 H 0.060 0.940 11 N -0.325 5.325 12 C -0.113 4.113 13 C -0.210 4.210 14 N -0.218 5.218 15 C -0.142 4.142 16 N -0.171 5.171 17 H 0.251 0.749 18 H 0.068 0.932 19 H 0.135 0.865 20 H 0.111 0.889 21 H 0.175 0.825 22 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.643 -5.100 2.048 6.099 hybrid contribution 0.561 0.574 0.749 1.098 sum 3.204 -4.526 2.797 6.211 Atomic orbital electron populations 1.70087 1.05697 1.26066 1.46249 1.24947 0.94679 0.98646 0.93996 0.86748 0.79680 0.83337 0.78630 1.20174 1.21257 1.20437 1.20775 0.92268 0.89250 1.55018 0.92813 1.17727 0.86375 0.87037 0.91358 0.93968 1.59284 1.27204 1.41776 1.04211 1.23935 1.02729 0.98471 0.86165 1.21790 1.01700 0.98715 0.98815 1.70082 1.22011 1.20455 1.09292 1.24644 0.99517 0.97699 0.92324 1.43344 1.36049 1.27751 1.09995 0.74885 0.93220 0.86491 0.88937 0.82461 0.78831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.05 12.77 55.43 0.71 -23.35 14 2 C 0.08 2.31 5.39 -17.82 -0.10 2.22 14 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 14 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 14 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 7 C -0.53 -14.43 8.71 -34.44 -0.30 -14.73 14 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 14 9 C 0.29 6.92 3.14 -70.02 -0.22 6.70 14 10 H 0.04 1.09 8.14 -51.93 -0.42 0.67 14 11 N -0.80 -18.39 8.39 -6.65 -0.06 -18.45 14 12 C 0.01 0.14 6.21 -81.60 -0.51 -0.36 14 13 C -0.06 -1.36 11.21 -17.81 -0.20 -1.56 14 14 N -0.50 -10.15 11.25 -14.67 -0.17 -10.32 14 15 C 0.14 2.40 13.04 -90.38 -1.18 1.22 14 16 N -0.57 -10.07 6.15 -10.30 -0.06 -10.13 14 17 H 0.41 6.09 8.96 -40.82 -0.37 5.72 14 18 H 0.26 7.03 8.31 -40.82 -0.34 6.69 14 19 H 0.32 7.15 8.08 -39.29 -0.32 6.84 14 20 H 0.30 6.19 9.06 -39.29 -0.36 5.84 14 21 H 0.16 3.18 7.50 -52.49 -0.39 2.78 14 22 H 0.20 2.36 8.06 -52.49 -0.42 1.93 14 LS Contribution 202.98 15.07 3.06 3.06 Total: -1.00 -30.87 202.98 -5.86 -36.73 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -1.82 Total: 12.91 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.50 Total: -6.51 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.42 Total: -62.24 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -30.87 -5.86 -36.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845556.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.309 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds