Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38915 * 126.32453 * 2 1 4 4 C 1.38291 * 107.90724 * 179.86706 * 3 2 1 5 5 N 1.38008 * 125.69965 * 180.14804 * 4 3 2 6 6 N 1.36620 * 108.61098 * 0.39357 * 4 3 2 7 7 H 0.97001 * 125.77219 * 179.75437 * 6 4 3 8 8 C 1.38393 * 108.45918 * 359.75671 * 6 4 3 9 9 C 1.39787 * 126.16506 * 179.97438 * 8 6 4 10 10 H 1.07997 * 120.00190 * 185.65252 * 9 8 6 11 11 C 1.39856 * 119.99982 * 5.65416 * 9 8 6 12 12 N 1.31038 * 119.99809 * 9.04434 * 11 9 8 13 13 Si 1.86797 * 119.99928 * 189.04255 * 11 9 8 14 14 H 1.48507 * 109.47125 * 94.05003 * 13 11 9 15 15 H 1.48504 * 109.47035 * 214.04335 * 13 11 9 16 16 H 1.48500 * 109.47477 * 334.04654 * 13 11 9 17 17 H 1.08997 * 109.47477 * 269.69144 * 1 2 3 18 18 H 1.09002 * 109.46472 * 149.68919 * 1 2 3 19 19 H 1.09002 * 109.47112 * 29.69797 * 1 2 3 20 20 H 1.07997 * 126.04788 * 0.02562 * 3 2 1 21 21 H 0.96996 * 120.00664 * 180.26310 * 5 4 3 22 22 H 0.96999 * 119.99626 * 0.26508 * 5 4 3 23 23 H 0.96999 * 119.99816 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1192 0.0000 4 6 3.6420 0.6823 0.0031 5 7 4.7601 1.4912 0.0069 6 7 3.6466 -0.6839 -0.0040 7 1 4.4355 -1.2482 -0.0070 8 6 2.3354 -1.1265 -0.0060 9 6 1.9148 -2.4596 -0.0132 10 1 0.8647 -2.6940 -0.1063 11 6 2.8539 -3.4898 0.1001 12 7 4.1009 -3.2105 0.3898 13 14 2.3304 -5.2637 -0.1616 14 1 2.5748 -5.6486 -1.5750 15 1 3.1158 -6.1490 0.7353 16 1 0.8845 -5.4038 0.1466 17 1 -0.3634 -0.0055 1.0276 18 1 -0.3632 -0.8872 -0.5187 19 1 -0.3633 0.8927 -0.5091 20 1 2.0028 2.1485 0.0004 21 1 5.6455 1.0950 0.0050 22 1 4.6606 2.4561 0.0116 23 1 4.7523 -3.9250 0.4680 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855234.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = 4.039551 kcal Electronic energy + Delta-G solvation = -9165.985489 eV Core-core repulsion = 7399.083546 eV Total energy + Delta-G solvation = -1766.901944 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.84438 -35.61181 -34.32047 -32.34486 -29.70591 -27.90019 -24.73841 -21.10631 -20.20217 -19.13285 -17.49156 -16.90634 -16.17756 -14.96413 -14.77232 -14.18338 -13.73102 -13.30389 -13.03602 -12.93428 -12.62237 -12.18825 -12.10478 -11.50663 -11.33415 -10.57966 -8.91079 -8.63668 -8.05139 -5.79622 1.32692 1.42088 1.56010 2.10337 2.27599 2.55241 2.92039 3.47767 3.90571 4.84706 5.04951 5.21724 5.23100 5.33770 5.50242 5.64545 5.98106 6.11021 6.40587 6.55746 6.79588 7.15515 7.29746 7.58891 7.87596 8.46621 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.058396 B = 0.017895 C = 0.013863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.372274 B = 1564.336774 C = 2019.238950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.316 4.316 3 C -0.271 4.271 4 C 0.203 3.797 5 N -0.863 5.863 6 N -0.573 5.573 7 H 0.412 0.588 8 C 0.169 3.831 9 C -0.473 4.473 10 H 0.087 0.913 11 C 0.017 3.983 12 N -0.885 5.885 13 Si 0.996 3.004 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.260 1.260 17 H 0.035 0.965 18 H 0.039 0.961 19 H 0.051 0.949 20 H 0.118 0.882 21 H 0.391 0.609 22 H 0.412 0.588 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 1.371 -0.917 1.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.322 4.322 3 C -0.300 4.300 4 C -0.006 4.006 5 N -0.415 5.415 6 N -0.185 5.185 7 H 0.257 0.743 8 C 0.057 3.943 9 C -0.508 4.508 10 H 0.105 0.895 11 C -0.189 4.189 12 N -0.520 5.520 13 Si 0.818 3.182 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.183 1.183 17 H 0.054 0.946 18 H 0.058 0.942 19 H 0.070 0.930 20 H 0.136 0.864 21 H 0.218 0.782 22 H 0.243 0.757 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.930 1.145 -0.876 1.716 hybrid contribution 0.750 -0.631 -0.013 0.980 sum 1.680 0.514 -0.889 1.969 Atomic orbital electron populations 1.19613 0.90987 0.99713 0.99033 1.19542 0.95046 0.91909 1.25731 1.19893 0.89980 0.97083 1.23091 1.17820 0.89261 0.82096 1.11412 1.40649 1.03432 1.07077 1.90301 1.42623 1.09086 1.04021 1.62810 0.74317 1.18006 0.81303 0.93551 1.01463 1.18902 0.95521 0.89376 1.46998 0.89476 1.26691 0.94330 1.05898 0.92004 1.69127 1.04332 1.36503 1.42051 0.84940 0.79236 0.75362 0.78619 1.19276 1.19785 1.18347 0.94599 0.94189 0.92999 0.86409 0.78184 0.75699 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.62 10.16 71.24 0.72 -0.89 14 2 C -0.32 -16.82 6.23 -19.32 -0.12 -16.94 14 3 C -0.27 -13.41 10.82 22.44 0.24 -13.17 14 4 C 0.20 9.72 8.35 131.89 1.10 10.82 14 5 N -0.86 -31.03 9.05 -54.17 -0.49 -31.52 14 6 N -0.57 -30.67 5.78 -183.66 -1.06 -31.73 14 7 H 0.41 21.87 6.45 -92.71 -0.60 21.28 14 8 C 0.17 9.65 6.67 38.87 0.26 9.91 14 9 C -0.47 -26.51 9.04 23.04 0.21 -26.30 14 10 H 0.09 4.72 7.23 -2.91 -0.02 4.70 14 11 C 0.02 0.90 5.48 85.20 0.47 1.36 14 12 N -0.89 -46.45 10.81 21.83 0.24 -46.22 14 13 Si 1.00 39.95 29.57 68.60 2.03 41.98 14 14 H -0.27 -10.41 7.11 99.48 0.71 -9.70 14 15 H -0.27 -10.47 7.11 99.48 0.71 -9.76 14 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 14 17 H 0.04 1.52 8.14 -2.39 -0.02 1.50 14 18 H 0.04 1.75 7.48 -2.39 -0.02 1.73 14 19 H 0.05 2.04 8.14 -2.39 -0.02 2.02 14 20 H 0.12 5.19 8.06 -2.91 -0.02 5.16 14 21 H 0.39 12.52 8.95 -92.71 -0.83 11.69 14 22 H 0.41 12.19 8.95 -92.71 -0.83 11.36 14 23 H 0.29 13.68 8.30 -92.71 -0.77 12.92 14 Total: -1.00 -61.85 204.97 2.59 -59.26 By element: Atomic # 1 Polarization: 44.46 SS G_CDS: -1.01 Total: 43.45 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 2.88 Total: -35.22 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -1.32 Total: -109.47 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -61.85 2.59 -59.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855234.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.304 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds