Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38750 * 120.63488 * 125.00292 * 10 9 7 12 12 N 1.32195 * 119.12406 * 179.97438 * 11 10 9 13 13 N 1.28741 * 120.38808 * 359.97438 * 12 11 10 14 14 C 1.31982 * 121.35715 * 0.02562 * 13 12 11 15 15 N 1.32048 * 120.87241 * 359.72284 * 14 13 12 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 18 18 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 19 19 H 1.08002 * 120.43708 * 359.97369 * 11 10 9 20 20 H 1.08000 * 119.56279 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.1690 -4.6314 0.9631 12 7 3.0427 -5.6230 0.9300 13 7 3.9377 -5.6718 0.0058 14 6 4.0115 -4.7425 -0.9285 15 7 3.1619 -3.7318 -0.9475 16 1 -0.4850 0.8401 -0.0004 17 1 0.6242 -2.5609 0.8844 18 1 0.6244 -2.5529 -0.8956 19 1 1.4176 -4.5899 1.7378 20 1 4.7738 -4.8123 -1.6904 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259893467.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = 41.472121 kcal Electronic energy + Delta-G solvation = -8605.788954 eV Core-core repulsion = 6802.395776 eV Total energy + Delta-G solvation = -1803.393178 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.67696 -36.60661 -35.10342 -33.96593 -30.52500 -26.80451 -26.13061 -23.64075 -19.67260 -18.42573 -17.64850 -17.13330 -16.50644 -16.41366 -14.50869 -14.31071 -13.76831 -13.12862 -12.85765 -12.69310 -12.45535 -12.35851 -12.01482 -11.71089 -10.92637 -10.59084 -10.14607 -8.25298 -6.34914 -0.38101 -0.19929 1.42664 1.44052 1.52204 2.38388 2.61067 2.82407 3.01635 3.12970 3.27174 4.04792 4.14810 4.52782 5.03884 5.22519 5.27509 5.66327 5.98938 6.17556 6.71703 7.32528 7.46196 8.85482 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.089692 B = 0.013060 C = 0.012118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.103191 B = 2143.372196 C = 2310.044625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.063 3.937 10 C 0.180 3.820 11 C -0.012 4.012 12 N -0.210 5.210 13 N -0.320 5.320 14 C 0.231 3.769 15 N -0.492 5.492 16 H 0.268 0.732 17 H 0.049 0.951 18 H 0.033 0.967 19 H 0.210 0.790 20 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -4.642 0.065 6.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.025 3.975 10 C 0.025 3.975 11 C -0.181 4.181 12 N -0.058 5.058 13 N -0.167 5.167 14 C -0.058 4.058 15 N -0.214 5.214 16 H 0.077 0.923 17 H 0.067 0.933 18 H 0.051 0.949 19 H 0.227 0.773 20 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 4.607 -5.366 0.009 7.072 hybrid contribution -0.345 1.579 -0.114 1.620 sum 4.262 -3.787 -0.106 5.702 Atomic orbital electron populations 1.70010 1.07254 1.28288 1.50579 1.25738 0.95750 1.02626 0.94394 0.85537 0.78354 0.78481 0.78902 1.19777 1.20392 1.19507 1.21116 0.92914 0.90712 1.51914 0.93037 1.18249 0.91777 0.88657 0.98771 1.23327 0.91846 0.94249 0.88032 1.25336 1.00173 0.92029 1.00569 1.73519 0.98997 1.19124 1.14208 1.73468 1.16173 1.25043 1.02023 1.27096 0.96250 0.85783 0.96710 1.69020 1.04063 1.22875 1.25397 0.92276 0.93286 0.94905 0.77306 0.74181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 13.29 21.45 0.28 -51.49 14 2 C 0.01 0.78 5.46 84.66 0.46 1.24 14 3 Si 0.96 42.54 29.54 68.60 2.03 44.57 14 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 14 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 14 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 14 7 C -0.53 -28.35 8.94 25.60 0.23 -28.12 14 8 H 0.05 2.79 7.71 -2.91 -0.02 2.77 14 9 C 0.06 3.05 5.41 29.10 0.16 3.21 14 10 C 0.18 7.46 6.15 42.59 0.26 7.72 14 11 C -0.01 -0.43 11.00 84.76 0.93 0.51 14 12 N -0.21 -7.58 11.63 -57.02 -0.66 -8.25 14 13 N -0.32 -11.25 11.57 -61.23 -0.71 -11.96 14 14 C 0.23 7.64 12.39 180.75 2.24 9.88 14 15 N -0.49 -19.92 10.24 -187.59 -1.92 -21.84 14 16 H 0.27 14.23 8.31 -92.70 -0.77 13.46 14 17 H 0.05 2.31 7.95 -2.38 -0.02 2.29 14 18 H 0.03 1.71 8.14 -2.39 -0.02 1.69 14 19 H 0.21 5.90 8.01 -2.91 -0.02 5.87 14 20 H 0.24 5.51 8.06 -2.91 -0.02 5.49 14 Total: -1.00 -60.80 195.10 4.54 -56.26 By element: Atomic # 1 Polarization: -2.96 SS G_CDS: 1.24 Total: -1.71 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 4.28 Total: -5.58 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -3.01 Total: -93.54 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -60.80 4.54 -56.26 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893467.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.732 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds