Wall clock time and date at job start Mon Mar 30 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.50698 * 109.47014 * 120.00010 * 2 1 3 5 5 H 1.07997 * 120.00161 * 120.00348 * 4 2 1 6 6 C 1.37877 * 120.00133 * 300.00192 * 4 2 1 7 7 N 1.31522 * 119.99898 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47283 * 89.99858 * 8 6 4 10 10 H 1.48495 * 109.47301 * 210.00133 * 8 6 4 11 11 H 1.48502 * 109.47087 * 330.00201 * 8 6 4 12 12 C 1.50696 * 109.47430 * 240.00018 * 2 1 3 13 13 C 1.39870 * 125.89765 * 325.00293 * 12 2 1 14 14 C 1.35315 * 107.92205 * 179.97438 * 13 12 2 15 15 N 1.34948 * 107.74520 * 0.02562 * 14 13 12 16 16 H 0.96997 * 126.03916 * 180.02562 * 15 14 13 17 17 N 1.30839 * 125.90371 * 144.95853 * 12 2 1 18 18 H 1.09003 * 109.46610 * 59.99906 * 1 2 3 19 19 H 1.08996 * 109.47221 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47130 * 300.00329 * 1 2 3 21 21 H 0.96999 * 119.99671 * 180.02562 * 7 6 4 22 22 H 1.08001 * 126.04288 * 359.94312 * 13 12 2 23 23 H 1.08007 * 126.13167 * 179.73081 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6295 -0.5460 4.4124 10 1 1.3430 -0.9493 5.1120 11 1 2.4858 -2.5662 3.7119 12 6 2.0324 -0.7104 -1.2304 13 6 1.4308 -1.8145 -1.8431 14 6 2.1821 -2.1564 -2.9153 15 7 3.2226 -1.2994 -2.9785 16 1 3.9261 -1.3043 -3.6463 17 7 3.1063 -0.4004 -1.9106 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 0.7094 1.1618 3.4844 22 1 0.5266 -2.3074 -1.5176 23 1 1.9869 -2.9722 -3.5956 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259914012.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:12 Heat of formation + Delta-G solvation = 41.535319 kcal Electronic energy + Delta-G solvation = -9109.550354 eV Core-core repulsion = 7344.274349 eV Total energy + Delta-G solvation = -1765.276005 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.82284 -36.38668 -33.39074 -30.88655 -30.40031 -27.20318 -24.00299 -22.14510 -20.11409 -18.85001 -18.17487 -16.60819 -15.41081 -15.24373 -14.59077 -14.30891 -13.56425 -13.42032 -12.81786 -12.67970 -12.28861 -12.14069 -11.72671 -11.34454 -11.14943 -10.45109 -10.00915 -9.43095 -8.09085 -6.23384 1.19597 1.43701 1.44355 1.55391 2.11232 2.30012 2.49383 3.18018 4.10606 4.26062 4.77726 4.96415 5.04323 5.11712 5.23999 5.27975 5.57735 5.84634 5.88965 6.09452 6.32703 6.75143 6.81911 7.04901 7.43679 8.96324 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.071958 B = 0.014685 C = 0.013547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.024696 B = 1906.257232 C = 2066.308382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.106 3.894 3 H -0.002 1.002 4 C -0.521 4.521 5 H 0.044 0.956 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.269 1.269 12 C 0.096 3.904 13 C -0.297 4.297 14 C 0.073 3.927 15 N -0.482 5.482 16 H 0.448 0.552 17 N -0.359 5.359 18 H 0.026 0.974 19 H 0.042 0.958 20 H 0.063 0.937 21 H 0.264 0.736 22 H 0.147 0.853 23 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.741 -6.608 -8.314 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.017 0.983 4 C -0.560 4.560 5 H 0.062 0.938 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.193 1.193 12 C -0.070 4.070 13 C -0.326 4.326 14 C -0.075 4.075 15 N -0.191 5.191 16 H 0.294 0.706 17 N -0.183 5.183 18 H 0.045 0.955 19 H 0.061 0.939 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.165 0.835 23 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.649 -5.713 -8.292 10.204 hybrid contribution -0.013 -0.639 0.644 0.907 sum 1.636 -6.352 -7.649 10.076 Atomic orbital electron populations 1.21550 0.95977 0.99938 0.99886 1.17182 0.93699 0.93162 0.87383 0.98341 1.21163 1.31432 1.12300 0.91068 0.93795 1.25717 0.95140 0.95734 1.01728 1.70012 1.37353 1.23879 1.24259 0.85507 0.78055 0.78995 0.78793 1.20469 1.20098 1.19330 1.23003 0.92007 0.96085 0.95870 1.21672 1.06633 1.03071 1.01239 1.23166 0.88422 0.96558 0.99308 1.46325 1.23514 1.24818 1.24442 0.70593 1.77217 1.22108 1.16944 1.02028 0.95524 0.93914 0.91789 0.92649 0.83486 0.75671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.56 71.98 0.62 -5.16 14 2 C 0.11 5.85 2.76 -12.29 -0.03 5.82 14 3 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 14 4 C -0.52 -30.43 8.55 25.60 0.22 -30.21 14 5 H 0.04 2.59 7.74 -2.91 -0.02 2.57 14 6 C 0.02 0.89 5.30 84.65 0.45 1.34 14 7 N -0.92 -53.85 11.32 21.45 0.24 -53.61 14 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 14 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 14 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 14 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 14 12 C 0.10 4.62 6.06 43.10 0.26 4.88 14 13 C -0.30 -11.46 9.97 21.99 0.22 -11.24 14 14 C 0.07 2.09 11.99 83.54 1.00 3.09 14 15 N -0.48 -15.30 7.36 -57.59 -0.42 -15.72 14 16 H 0.45 9.97 8.96 -213.34 -1.91 8.06 14 17 N -0.36 -16.34 12.70 -47.39 -0.60 -16.95 14 18 H 0.03 1.19 8.14 -2.39 -0.02 1.17 14 19 H 0.04 1.99 7.30 -2.39 -0.02 1.97 14 20 H 0.06 3.49 6.07 -2.39 -0.01 3.48 14 21 H 0.26 14.61 8.31 -92.71 -0.77 13.84 14 22 H 0.15 5.31 7.43 -2.91 -0.02 5.28 14 23 H 0.23 3.48 8.06 -2.91 -0.02 3.46 14 Total: -1.00 -69.69 205.59 3.28 -66.41 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -0.70 Total: 4.60 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 2.73 Total: -31.48 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -0.78 Total: -86.27 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.69 3.28 -66.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259914012.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.946 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds