Wall clock time and date at job start Mon Mar 30 2020 02:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47025 * 269.99767 * 3 2 1 5 5 H 1.48504 * 109.46963 * 29.99664 * 3 2 1 6 6 H 1.48504 * 109.47293 * 149.99560 * 3 2 1 7 7 C 1.37882 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99450 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00291 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47163 * 179.97438 * 9 7 2 11 11 H 1.08993 * 115.51886 * 329.70687 * 10 9 7 12 12 C 1.53005 * 117.45972 * 115.18209 * 10 9 7 13 13 H 1.08996 * 119.30257 * 218.90545 * 12 10 9 14 14 C 1.54269 * 118.19646 * 13.98482 * 12 10 9 15 15 C 1.55235 * 104.23129 * 87.78818 * 14 12 10 16 16 C 1.54887 * 102.59116 * 322.08231 * 15 14 12 17 17 C 1.53003 * 117.46124 * 184.22506 * 10 9 7 18 18 H 1.08993 * 119.29643 * 140.16336 * 17 10 9 19 19 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47217 * 59.99785 * 9 7 2 21 21 H 1.08996 * 109.47007 * 299.99861 * 9 7 2 22 22 H 1.09004 * 110.48498 * 206.46274 * 14 12 10 23 23 H 1.09002 * 110.48611 * 329.11160 * 14 12 10 24 24 H 1.09005 * 110.89725 * 203.79222 * 15 14 12 25 25 H 1.08999 * 110.76667 * 80.31506 * 15 14 12 26 26 H 1.09001 * 110.48461 * 279.19133 * 16 15 14 27 27 H 1.09001 * 110.49136 * 156.67504 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 1 3.3771 -3.3621 0.4987 12 6 4.8018 -3.1101 -1.2257 13 1 4.6465 -4.1223 -1.5988 14 6 5.3079 -2.0468 -2.2223 15 6 6.6945 -1.6290 -1.6632 16 6 6.4581 -1.6385 -0.1325 17 6 5.5332 -2.8504 0.1030 18 1 5.9170 -3.6620 0.7210 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8752 -0.6805 -0.8888 22 1 5.4124 -2.4767 -3.2185 23 1 4.6322 -1.1917 -2.2437 24 1 6.9671 -0.6307 -2.0058 25 1 7.4580 -2.3557 -1.9407 26 1 5.9681 -0.7175 0.1835 27 1 7.4011 -1.7694 0.3984 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:02 Heat of formation + Delta-G solvation = 9.703799 kcal Electronic energy + Delta-G solvation = -9441.245097 eV Core-core repulsion = 7778.129117 eV Total energy + Delta-G solvation = -1663.115980 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.15524 -32.96193 -31.34437 -28.57967 -27.73254 -22.91225 -21.34843 -19.10546 -17.98486 -16.90598 -15.60039 -14.45417 -14.06852 -13.26889 -12.73762 -12.57302 -11.80120 -11.48384 -10.98794 -10.84215 -10.70419 -10.62584 -10.25420 -10.04136 -9.74844 -9.21629 -8.82716 -8.75719 -8.46723 -6.00210 -3.96626 3.32431 3.39942 3.43713 4.31469 4.48217 5.05793 5.26747 5.30179 5.39038 5.71498 5.77259 5.90856 5.97290 6.10486 6.20062 6.23163 6.40209 6.48101 6.63559 6.78070 6.83444 6.96943 7.35897 7.49659 7.84495 8.60069 9.05459 9.62331 11.13529 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.061779 B = 0.015743 C = 0.014237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.116724 B = 1778.096797 C = 1966.210229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.006 3.994 10 C -0.086 4.086 11 H 0.099 0.901 12 C -0.166 4.166 13 H 0.097 0.903 14 C -0.102 4.102 15 C -0.121 4.121 16 C -0.097 4.097 17 C -0.185 4.185 18 H 0.097 0.903 19 H 0.262 0.738 20 H 0.020 0.980 21 H 0.023 0.977 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.661 -2.312 -1.985 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.089 0.911 9 C -0.030 4.030 10 C -0.104 4.104 11 H 0.117 0.883 12 C -0.184 4.184 13 H 0.115 0.885 14 C -0.139 4.139 15 C -0.158 4.158 16 C -0.134 4.134 17 C -0.203 4.203 18 H 0.115 0.885 19 H 0.072 0.928 20 H 0.038 0.962 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.519 -2.192 -1.988 11.893 hybrid contribution 0.322 0.736 -0.004 0.803 sum 11.842 -1.457 -1.991 12.096 Atomic orbital electron populations 1.69913 1.06264 1.26762 1.51561 1.25020 0.94718 0.99058 0.94799 0.86822 0.80461 0.83809 0.78507 1.20298 1.21396 1.18958 1.21155 0.89412 0.94379 1.50161 0.91070 1.19310 0.96816 0.90425 0.96476 1.22547 0.90006 1.00496 0.97390 0.88261 1.23196 1.06381 0.99225 0.89630 0.88530 1.22068 0.95926 0.98843 0.97056 1.22699 0.97282 1.00295 0.95554 1.21903 0.97894 0.98107 0.95502 1.23312 0.95023 1.00069 1.01930 0.88535 0.92815 0.96178 0.95868 0.92246 0.90070 0.92056 0.92114 0.91062 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.96 55.43 0.77 -27.58 15 2 C 0.06 1.91 5.47 -17.82 -0.10 1.82 15 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.32 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 15 7 C -0.51 -14.91 9.63 -34.44 -0.33 -15.24 15 8 H 0.07 2.22 7.93 -52.49 -0.42 1.81 15 9 C 0.01 0.16 2.91 -27.89 -0.08 0.08 15 10 C -0.09 -1.81 5.66 -90.62 -0.51 -2.32 15 11 H 0.10 2.11 8.02 -51.93 -0.42 1.69 15 12 C -0.17 -3.01 6.92 -89.49 -0.62 -3.63 15 13 H 0.10 1.61 8.14 -51.93 -0.42 1.18 15 14 C -0.10 -1.72 6.29 -24.88 -0.16 -1.88 15 15 C -0.12 -1.79 6.93 -24.55 -0.17 -1.96 15 16 C -0.10 -1.56 6.35 -25.07 -0.16 -1.72 15 17 C -0.19 -3.23 6.92 -89.50 -0.62 -3.85 15 18 H 0.10 1.52 8.14 -51.93 -0.42 1.09 15 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 20 H 0.02 0.50 6.91 -51.93 -0.36 0.14 15 21 H 0.02 0.56 4.75 -51.93 -0.25 0.32 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.08 1.55 5.81 -51.93 -0.30 1.25 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.07 1.27 6.80 -51.93 -0.35 0.91 15 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 LS Contribution 216.63 15.07 3.26 3.26 Total: -1.00 -30.31 216.63 -7.17 -37.48 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.80 Total: -1.79 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.75 Total: -28.69 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.77 Total: -27.58 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -30.31 -7.17 -37.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.188 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds