Wall clock time and date at job start Mon Mar 30 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47025 * 269.99767 * 3 2 1 5 5 H 1.48504 * 109.46963 * 29.99664 * 3 2 1 6 6 H 1.48504 * 109.47293 * 149.99560 * 3 2 1 7 7 C 1.37882 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99450 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00291 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47163 * 179.97438 * 9 7 2 11 11 H 1.08993 * 115.51886 * 329.70687 * 10 9 7 12 12 C 1.53005 * 117.45972 * 115.18209 * 10 9 7 13 13 H 1.08996 * 119.30257 * 218.90545 * 12 10 9 14 14 C 1.54269 * 118.19646 * 13.98482 * 12 10 9 15 15 C 1.55235 * 104.23129 * 87.78818 * 14 12 10 16 16 C 1.54887 * 102.59116 * 322.08231 * 15 14 12 17 17 C 1.53003 * 117.46124 * 184.22506 * 10 9 7 18 18 H 1.08993 * 119.29643 * 140.16336 * 17 10 9 19 19 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47217 * 59.99785 * 9 7 2 21 21 H 1.08996 * 109.47007 * 299.99861 * 9 7 2 22 22 H 1.09004 * 110.48498 * 206.46274 * 14 12 10 23 23 H 1.09002 * 110.48611 * 329.11160 * 14 12 10 24 24 H 1.09005 * 110.89725 * 203.79222 * 15 14 12 25 25 H 1.08999 * 110.76667 * 80.31506 * 15 14 12 26 26 H 1.09001 * 110.48461 * 279.19133 * 16 15 14 27 27 H 1.09001 * 110.49136 * 156.67504 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 1 3.3771 -3.3621 0.4987 12 6 4.8018 -3.1101 -1.2257 13 1 4.6465 -4.1223 -1.5988 14 6 5.3079 -2.0468 -2.2223 15 6 6.6945 -1.6290 -1.6632 16 6 6.4581 -1.6385 -0.1325 17 6 5.5332 -2.8504 0.1030 18 1 5.9170 -3.6620 0.7210 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6800 0.8911 21 1 3.8752 -0.6805 -0.8888 22 1 5.4124 -2.4767 -3.2185 23 1 4.6322 -1.1917 -2.2437 24 1 6.9671 -0.6307 -2.0058 25 1 7.4580 -2.3557 -1.9407 26 1 5.9681 -0.7175 0.1835 27 1 7.4011 -1.7694 0.3984 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:01 Heat of formation + Delta-G solvation = -8.243920 kcal Electronic energy + Delta-G solvation = -9442.023369 eV Core-core repulsion = 7778.129117 eV Total energy + Delta-G solvation = -1663.894251 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.57768 -35.09610 -32.94512 -30.48470 -29.03160 -24.95594 -22.71225 -20.45213 -19.59327 -19.05142 -17.10965 -16.18545 -15.81092 -14.84178 -14.68280 -14.09304 -13.50773 -13.19279 -12.65064 -12.45892 -12.09719 -11.98061 -11.83050 -11.79006 -11.60827 -11.10824 -10.76822 -10.39097 -10.27546 -8.29572 -6.32348 1.33510 1.35930 1.48221 2.35410 2.86013 3.06516 3.70925 3.97292 3.99503 4.36255 4.41502 4.64242 4.66388 4.74065 4.84259 4.91099 5.05122 5.17685 5.22053 5.30608 5.42259 5.46960 5.52181 5.68060 5.72746 6.30180 6.74550 7.30791 8.87725 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.061779 B = 0.015743 C = 0.014237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.116724 B = 1778.096797 C = 1966.210229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.527 4.527 8 H 0.027 0.973 9 C 0.018 3.982 10 C -0.130 4.130 11 H 0.081 0.919 12 C -0.164 4.164 13 H 0.111 0.889 14 C -0.108 4.108 15 C -0.112 4.112 16 C -0.102 4.102 17 C -0.161 4.161 18 H 0.119 0.881 19 H 0.266 0.734 20 H 0.016 0.984 21 H 0.031 0.969 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.621 -1.714 -2.481 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.565 4.565 8 H 0.045 0.955 9 C -0.019 4.019 10 C -0.148 4.148 11 H 0.099 0.901 12 C -0.182 4.182 13 H 0.129 0.871 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.178 4.178 18 H 0.137 0.863 19 H 0.075 0.925 20 H 0.034 0.966 21 H 0.049 0.951 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.493 -1.612 -2.484 14.792 hybrid contribution -0.676 0.448 0.153 0.826 sum 13.817 -1.163 -2.331 14.060 Atomic orbital electron populations 1.70073 1.08310 1.28122 1.52976 1.26035 0.95648 1.03542 0.94233 0.85666 0.79540 0.78176 0.79380 1.18875 1.20787 1.17023 1.21508 0.92174 0.92881 1.49933 0.95496 1.19128 0.93361 0.93059 0.96348 1.22333 0.92829 0.98180 1.01457 0.90074 1.23369 1.04684 1.00182 0.89979 0.87137 1.22140 0.96792 0.97455 0.98109 1.22696 0.96297 1.01842 0.94076 1.22010 0.98577 0.96283 0.97060 1.23453 0.92239 1.01113 1.01041 0.86304 0.92513 0.96631 0.95118 0.90127 0.92861 0.90730 0.89555 0.93048 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.29 15 2 C 0.00 0.09 5.47 84.66 0.46 0.56 15 3 Si 0.95 45.38 27.47 68.60 1.88 47.27 15 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 15 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 15 7 C -0.53 -31.81 9.63 25.60 0.25 -31.56 15 8 H 0.03 1.79 7.93 -2.91 -0.02 1.77 15 9 C 0.02 0.88 2.91 29.85 0.09 0.96 15 10 C -0.13 -5.44 5.66 -10.79 -0.06 -5.51 15 11 H 0.08 3.61 8.02 -2.39 -0.02 3.59 15 12 C -0.16 -5.63 6.92 -10.06 -0.07 -5.70 15 13 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 14 C -0.11 -3.36 6.29 31.79 0.20 -3.16 15 15 C -0.11 -2.82 6.93 32.01 0.22 -2.60 15 16 C -0.10 -2.90 6.35 31.67 0.20 -2.70 15 17 C -0.16 -5.17 6.92 -10.07 -0.07 -5.24 15 18 H 0.12 3.30 8.14 -2.39 -0.02 3.28 15 19 H 0.27 15.95 8.31 -92.71 -0.77 15.18 15 20 H 0.02 0.77 6.91 -2.39 -0.02 0.75 15 21 H 0.03 1.47 4.75 -2.39 -0.01 1.45 15 22 H 0.08 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.05 1.96 5.81 -2.39 -0.01 1.94 15 24 H 0.07 1.71 8.14 -2.38 -0.02 1.69 15 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 15 26 H 0.05 1.68 6.80 -2.39 -0.02 1.66 15 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -66.90 216.63 4.48 -62.42 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.08 Total: 6.55 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 1.22 Total: -54.94 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.30 Total: -61.29 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Total: -66.90 4.48 -62.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.174 kcal (2) G-P(sol) polarization free energy of solvation -66.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds