Wall clock time and date at job start Mon Mar 30 2020 01:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86808 * 119.99575 * 2 1 4 4 H 1.48494 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47110 * 299.99529 * 3 2 1 6 6 H 1.48494 * 109.47086 * 59.99603 * 3 2 1 7 7 C 1.40062 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99976 * 179.97438 * 7 2 1 9 9 C 1.39955 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.39736 * 126.35555 * 0.03044 * 9 7 2 11 11 C 1.39303 * 107.04996 * 179.74346 * 10 9 7 12 12 C 1.35963 * 108.09239 * 0.37879 * 11 10 9 13 13 C 1.50701 * 125.47547 * 179.87723 * 12 11 10 14 14 N 1.46901 * 109.46921 * 264.69137 * 13 12 11 15 15 N 1.36165 * 109.05236 * 359.61138 * 12 11 10 16 16 H 0.97002 * 125.74365 * 180.26060 * 15 12 11 17 17 H 0.96999 * 120.00516 * 0.02562 * 1 2 3 18 18 H 1.08001 * 126.47572 * 359.96948 * 10 9 7 19 19 H 1.07998 * 125.95197 * 180.24741 * 11 10 9 20 20 H 1.09002 * 109.47060 * 24.69318 * 13 12 11 21 21 H 1.09001 * 109.47380 * 144.69405 * 13 12 11 22 22 H 1.00898 * 110.99877 * 56.04636 * 14 13 12 23 23 H 1.00908 * 110.99847 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.7025 1.3466 0.0006 5 1 1.8838 2.3965 -1.2126 6 1 1.8837 2.3965 1.2124 7 6 2.0090 -1.2129 0.0005 8 1 3.0890 -1.2129 0.0001 9 6 1.3092 -2.4250 0.0005 10 6 -0.0795 -2.5797 -0.0006 11 6 -0.3380 -3.9485 -0.0061 12 6 0.8535 -4.6033 0.0003 13 6 1.0291 -6.1000 0.0000 14 7 1.2053 -6.5726 1.3798 15 7 1.8629 -3.6893 0.0010 16 1 2.8114 -3.8926 0.0014 17 1 -0.4851 0.8400 -0.0004 18 1 -0.8138 -1.7877 -0.0011 19 1 -1.3148 -4.4093 -0.0120 20 1 0.1465 -6.5692 -0.4348 21 1 1.9078 -6.3627 -0.5890 22 1 0.4329 -6.2851 1.9618 23 1 1.3247 -7.5742 1.4064 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260590147.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:12 Heat of formation + Delta-G solvation = 6.546418 kcal Electronic energy + Delta-G solvation = -9000.481528 eV Core-core repulsion = 7233.688291 eV Total energy + Delta-G solvation = -1766.793238 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.91949 -35.80730 -34.79200 -31.18028 -30.16458 -27.34491 -24.03621 -21.15053 -20.64568 -19.02112 -17.47750 -16.71853 -15.76932 -15.33280 -14.38320 -14.17992 -13.83875 -13.53473 -13.46419 -13.02530 -12.84088 -12.11134 -11.70192 -11.53253 -11.14251 -9.58224 -9.13997 -8.67526 -8.36398 -6.11059 1.33975 1.41853 1.57663 1.92961 2.26293 2.60959 3.15609 3.50198 3.96882 4.40363 4.54935 4.85386 4.97937 5.26142 5.45628 5.92269 6.03128 6.21552 6.27597 6.47969 6.72571 6.93283 7.10910 7.32856 7.63744 8.55352 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.111173 B = 0.012580 C = 0.011696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 251.799585 B = 2225.249335 C = 2393.447914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.022 3.978 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.489 4.489 8 H 0.073 0.927 9 C 0.177 3.823 10 C -0.328 4.328 11 C -0.200 4.200 12 C -0.078 4.078 13 C 0.154 3.846 14 N -0.855 5.855 15 N -0.581 5.581 16 H 0.401 0.599 17 H 0.279 0.721 18 H 0.130 0.870 19 H 0.114 0.886 20 H 0.049 0.951 21 H 0.073 0.927 22 H 0.342 0.658 23 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -5.077 0.236 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.091 0.909 9 C 0.065 3.935 10 C -0.351 4.351 11 C -0.227 4.227 12 C -0.186 4.186 13 C 0.023 3.977 14 N -0.386 5.386 15 N -0.182 5.182 16 H 0.237 0.763 17 H 0.090 0.910 18 H 0.147 0.853 19 H 0.132 0.868 20 H 0.067 0.933 21 H 0.091 0.909 22 H 0.155 0.845 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.019 -4.596 0.228 5.504 hybrid contribution -0.445 0.143 -0.162 0.495 sum 2.574 -4.453 0.066 5.144 Atomic orbital electron populations 1.69910 1.08794 1.28987 1.38949 1.26661 0.95736 1.04158 0.92427 0.84896 0.78746 0.75698 0.78591 1.18223 1.19241 1.19326 1.18811 0.94146 0.89940 1.49542 0.90924 1.18450 0.92412 0.83770 0.98850 1.21759 0.95147 0.95224 1.22977 1.20561 0.95871 0.94572 1.11725 1.20066 0.87475 0.91277 1.19829 1.19880 1.00211 0.87407 0.90180 1.58741 1.51246 1.18394 1.10268 1.41877 1.07129 1.05411 1.63812 0.76345 0.91040 0.85298 0.86792 0.93322 0.90876 0.84506 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.18 10.26 21.85 0.22 -46.95 14 2 C 0.02 1.18 5.50 85.28 0.47 1.65 14 3 Si 1.00 40.51 29.56 68.60 2.03 42.54 14 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 14 5 H -0.27 -10.38 7.11 99.48 0.71 -9.68 14 6 H -0.27 -10.45 7.11 99.48 0.71 -9.75 14 7 C -0.49 -27.75 9.45 23.13 0.22 -27.53 14 8 H 0.07 3.87 7.85 -2.91 -0.02 3.84 14 9 C 0.18 10.21 6.89 38.95 0.27 10.48 14 10 C -0.33 -19.35 9.80 22.89 0.22 -19.13 14 11 C -0.20 -10.22 10.69 22.00 0.24 -9.98 14 12 C -0.08 -3.57 6.66 41.36 0.28 -3.29 14 13 C 0.15 5.14 7.31 85.56 0.63 5.77 14 14 N -0.85 -25.25 9.61 -190.00 -1.83 -27.07 14 15 N -0.58 -28.50 6.15 -175.02 -1.08 -29.57 14 16 H 0.40 17.33 8.96 -92.71 -0.83 16.50 14 17 H 0.28 14.20 8.30 -92.71 -0.77 13.43 14 18 H 0.13 8.11 5.70 -2.91 -0.02 8.09 14 19 H 0.11 5.20 8.06 -2.91 -0.02 5.17 14 20 H 0.05 1.47 8.14 -2.39 -0.02 1.45 14 21 H 0.07 2.25 8.14 -2.39 -0.02 2.23 14 22 H 0.34 10.31 8.98 -89.70 -0.81 9.51 14 23 H 0.35 7.72 9.08 -89.69 -0.81 6.91 14 Total: -1.00 -65.19 206.42 0.46 -64.73 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -1.20 Total: 38.37 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 2.32 Total: -42.03 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -2.68 Total: -103.60 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -65.19 0.46 -64.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260590147.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.273 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds