Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48493 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46830 * 299.99793 * 3 2 1 6 6 H 1.48498 * 109.47195 * 59.99304 * 3 2 1 7 7 C 1.40051 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.41591 * 119.99921 * 0.02562 * 7 2 1 10 10 N 1.33439 * 119.25451 * 0.02562 * 9 7 2 11 11 C 1.32025 * 120.83612 * 179.97438 * 10 9 7 12 12 C 1.38738 * 119.33134 * 359.97438 * 11 10 9 13 13 C 1.39846 * 118.62422 * 359.97438 * 12 11 10 14 14 O 1.35512 * 120.43755 * 179.97438 * 13 12 11 15 15 N 1.32385 * 119.12761 * 0.25336 * 13 12 11 16 16 H 0.97002 * 119.99979 * 0.02562 * 1 2 3 17 17 H 1.07998 * 120.33039 * 180.02562 * 11 10 9 18 18 H 1.07996 * 120.68735 * 179.97438 * 12 11 10 19 19 H 0.96700 * 114.00230 * 89.99978 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7009 1.3463 0.0006 5 1 1.8823 2.3964 -1.2126 6 1 1.8822 2.3965 1.2124 7 6 2.0072 -1.2129 0.0005 8 1 3.0872 -1.2129 0.0010 9 6 1.2992 -2.4391 0.0005 10 7 -0.0351 -2.4217 -0.0005 11 6 -0.7265 -3.5464 -0.0010 12 6 -0.0521 -4.7588 -0.0011 13 6 1.3463 -4.7476 -0.0010 14 8 2.0422 -5.9103 -0.0005 15 7 1.9814 -3.5860 0.0041 16 1 -0.4850 0.8401 -0.0004 17 1 -1.8062 -3.5228 -0.0023 18 1 -0.5958 -5.6919 -0.0011 19 1 2.2442 -6.2482 -0.8838 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950841.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = 2.705643 kcal Electronic energy + Delta-G solvation = -8869.473822 eV Core-core repulsion = 6966.680942 eV Total energy + Delta-G solvation = -1902.792881 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.048 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.08451 -36.41879 -33.62759 -31.46635 -29.72757 -26.34376 -22.43717 -21.90642 -18.52259 -16.63084 -16.22911 -15.01566 -14.59270 -13.84904 -13.25932 -12.60768 -12.40331 -11.52771 -11.28372 -10.91134 -10.69971 -10.31029 -9.48589 -9.00778 -8.93554 -7.98366 -7.41075 -6.60304 -4.79034 2.51400 2.74204 3.04518 3.08477 3.11105 3.85869 4.54900 4.79259 5.81797 5.88935 6.25345 6.48675 6.66238 7.00548 7.07869 7.47081 8.13215 8.17405 8.52316 8.63856 9.01419 10.07407 10.22405 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.093201 B = 0.015575 C = 0.013424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.354981 B = 1797.344948 C = 2085.332250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.065 3.935 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.397 4.397 8 H 0.095 0.905 9 C 0.404 3.596 10 N -0.513 5.513 11 C 0.166 3.834 12 C -0.389 4.389 13 C 0.359 3.641 14 O -0.498 6.498 15 N -0.611 5.611 16 H 0.276 0.724 17 H 0.134 0.866 18 H 0.109 0.891 19 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 -0.924 -1.681 1.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.162 4.162 3 Si 0.744 3.256 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.113 0.887 9 C 0.168 3.832 10 N -0.231 5.231 11 C -0.008 4.008 12 C -0.418 4.418 13 C 0.166 3.834 14 O -0.303 6.303 15 N -0.341 5.341 16 H 0.087 0.913 17 H 0.151 0.849 18 H 0.127 0.873 19 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.179 0.165 -1.061 1.089 hybrid contribution -0.176 -0.420 -0.464 0.650 sum 0.004 -0.255 -1.525 1.546 Atomic orbital electron populations 1.70151 1.07343 1.28213 1.27347 1.26132 0.95072 1.01487 0.93520 0.86048 0.80831 0.80029 0.78663 1.18085 1.19612 1.19612 1.19442 0.94871 0.87457 1.41435 0.88734 1.19799 0.85589 0.89633 0.88155 1.69360 1.08115 1.26865 1.18753 1.22830 0.99413 0.88219 0.90370 1.22025 0.94443 0.99665 1.25643 1.19301 0.87148 0.84952 0.91998 1.84630 1.77013 1.35720 1.32961 1.68191 1.42407 0.98244 1.25265 0.91291 0.84853 0.87297 0.75768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.60 11.42 55.55 0.63 -17.97 13 2 C 0.06 1.65 5.50 -17.36 -0.10 1.55 13 3 Si 0.92 18.42 29.56 -169.99 -5.02 13.39 13 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 13 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 13 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 13 7 C -0.40 -11.03 9.38 -37.62 -0.35 -11.38 13 8 H 0.09 2.53 7.85 -52.49 -0.41 2.12 13 9 C 0.40 11.75 7.37 -158.33 -1.17 10.58 13 10 N -0.51 -14.43 7.87 -12.71 -0.10 -14.53 13 11 C 0.17 4.03 11.29 -17.28 -0.20 3.84 13 12 C -0.39 -9.03 10.15 -38.80 -0.39 -9.43 13 13 C 0.36 8.90 7.83 -16.71 -0.13 8.77 13 14 O -0.50 -10.36 13.58 -18.23 -0.25 -10.61 13 15 N -0.61 -17.09 10.38 -12.70 -0.13 -17.22 13 16 H 0.28 6.44 8.29 -40.82 -0.34 6.10 13 17 H 0.13 2.74 8.06 -52.49 -0.42 2.32 13 18 H 0.11 2.18 8.06 -52.49 -0.42 1.76 13 19 H 0.39 5.81 9.06 45.56 0.41 6.22 13 LS Contribution 186.96 15.07 2.82 2.82 Total: -1.00 -31.75 186.96 -4.37 -36.12 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 0.02 Total: 4.07 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.33 Total: 3.93 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.40 Total: -49.72 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.25 Total: -10.61 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 2.82 Total: 2.82 kcal Total: -31.75 -4.37 -36.12 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950841.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.823 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds