Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99756 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99616 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99622 * 3 2 1 7 7 C 1.38839 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00520 * 180.02562 * 7 2 1 9 9 N 1.36979 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.38444 * 119.99582 * 180.27510 * 9 7 2 11 11 N 1.32782 * 119.65183 * 179.44721 * 10 9 7 12 12 C 1.32344 * 119.46157 * 179.77214 * 11 10 9 13 13 C 1.38809 * 118.83196 * 0.49664 * 12 11 10 14 14 N 1.32222 * 119.28804 * 359.75144 * 13 12 11 15 15 N 1.28747 * 120.47867 * 359.97438 * 14 13 12 16 16 H 0.96999 * 119.99786 * 0.02562 * 1 2 3 17 17 H 0.97001 * 119.99879 * 359.97438 * 9 7 2 18 18 H 1.07999 * 120.58604 * 180.22718 * 12 11 10 19 19 H 1.07997 * 120.35644 * 179.72893 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.6999 6 1 3.5470 1.4401 0.7001 7 6 2.0096 -1.2024 0.0005 8 1 3.0896 -1.2025 0.0010 9 7 1.3247 -2.3886 0.0005 10 6 2.0169 -3.5875 0.0068 11 7 1.3460 -4.7334 0.0179 12 6 2.0116 -5.8773 0.0193 13 6 3.3993 -5.8444 0.0196 14 7 4.0186 -4.6763 0.0135 15 7 3.3441 -3.5796 0.0069 16 1 -0.4850 0.8401 -0.0004 17 1 0.3547 -2.3885 0.0005 18 1 1.4843 -6.8198 0.0246 19 1 3.9670 -6.7631 0.0252 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129970.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = 55.618757 kcal Electronic energy + Delta-G solvation = -8765.246381 eV Core-core repulsion = 6897.040736 eV Total energy + Delta-G solvation = -1868.205645 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.055 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.00666 -37.63834 -35.31819 -34.12881 -31.55203 -27.29829 -26.10376 -24.33997 -20.42375 -18.95361 -18.41444 -16.81737 -16.43782 -16.29375 -15.70851 -15.09524 -13.59679 -13.41252 -12.68460 -12.65631 -12.61688 -12.12818 -12.10773 -11.89964 -10.98595 -9.78637 -9.52811 -8.65792 -5.97708 0.16622 0.39642 1.41127 1.47588 1.55958 2.14726 2.62585 2.75152 3.26459 3.42903 3.89216 4.16856 4.57558 4.77102 5.24044 5.39455 5.74691 6.26464 6.65749 7.12668 7.25950 8.22784 8.51117 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.102404 B = 0.013608 C = 0.012063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.362309 B = 2057.145511 C = 2320.659351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.017 4.017 3 Si 1.011 2.989 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.313 4.313 8 H 0.107 0.893 9 N -0.507 5.507 10 C 0.410 3.590 11 N -0.565 5.565 12 C 0.177 3.823 13 C -0.135 4.135 14 N -0.190 5.190 15 N -0.394 5.394 16 H 0.285 0.715 17 H 0.406 0.594 18 H 0.224 0.776 19 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -6.133 0.030 6.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.219 4.219 3 Si 0.832 3.168 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.444 4.444 8 H 0.124 0.876 9 N -0.119 5.119 10 C 0.054 3.946 11 N -0.294 5.294 12 C -0.005 4.005 13 C -0.312 4.312 14 N -0.039 5.039 15 N -0.261 5.261 16 H 0.094 0.906 17 H 0.242 0.758 18 H 0.240 0.760 19 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.447 -4.624 0.032 5.231 hybrid contribution -0.774 -0.118 -0.009 0.783 sum 1.673 -4.742 0.023 5.029 Atomic orbital electron populations 1.69762 1.07423 1.30311 1.47423 1.26411 0.96688 1.03275 0.95517 0.84657 0.77926 0.75170 0.79026 1.19206 1.19472 1.18717 1.20139 0.93713 0.82183 1.48389 0.87551 1.40510 1.08187 1.01098 1.62139 1.20824 0.88952 0.87435 0.97413 1.68430 1.41004 0.98754 1.21206 1.24540 0.93087 0.96859 0.86031 1.24880 0.95777 0.99438 1.11061 1.73134 1.32033 0.96393 1.02371 1.73569 1.05015 1.20148 1.27330 0.90574 0.75767 0.75950 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.10 13.05 21.65 0.28 -48.81 13 2 C -0.02 -0.88 5.50 84.88 0.47 -0.41 13 3 Si 1.01 41.28 29.55 68.60 2.03 43.30 13 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 13 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 13 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 13 7 C -0.31 -17.35 9.70 84.03 0.82 -16.54 13 8 H 0.11 6.02 7.07 -2.91 -0.02 6.00 13 9 N -0.51 -27.48 5.43 -194.04 -1.05 -28.53 13 10 C 0.41 20.88 8.46 261.23 2.21 23.09 13 11 N -0.56 -24.42 10.57 -197.38 -2.09 -26.51 13 12 C 0.18 5.62 11.32 84.75 0.96 6.58 13 13 C -0.13 -4.37 11.35 84.77 0.96 -3.41 13 14 N -0.19 -8.27 11.63 -56.97 -0.66 -8.93 13 15 N -0.39 -20.23 10.29 -59.45 -0.61 -20.84 13 16 H 0.28 14.17 8.31 -92.71 -0.77 13.40 13 17 H 0.41 22.09 8.01 -92.71 -0.74 21.35 13 18 H 0.22 4.15 8.06 -2.91 -0.02 4.12 13 19 H 0.21 4.43 8.06 -2.91 -0.02 4.40 13 Total: -1.00 -65.09 187.66 3.85 -61.24 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.54 Total: 19.77 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.41 Total: 9.31 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -4.13 Total: -133.62 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -65.09 3.85 -61.24 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129970.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.856 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds