Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50691 * 109.47179 * 2 1 4 4 C 1.34325 * 125.30373 * 85.00489 * 3 2 1 5 5 C 1.46981 * 106.48715 * 179.72197 * 4 3 2 6 6 C 1.41343 * 127.10724 * 180.21480 * 5 4 3 7 7 H 1.07993 * 120.00772 * 0.02562 * 6 5 4 8 8 C 1.39678 * 119.99443 * 180.02562 * 6 5 4 9 9 N 1.31050 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99739 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46886 * 60.00503 * 10 8 6 12 12 H 1.48503 * 109.46818 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47365 * 300.00046 * 10 8 6 14 14 C 1.39265 * 105.77659 * 0.24470 * 5 4 3 15 15 N 1.34917 * 107.92658 * 359.97438 * 14 5 4 16 16 H 0.96998 * 124.79009 * 180.02562 * 15 14 5 17 17 H 1.09001 * 109.46343 * 299.99347 * 1 2 3 18 18 H 1.08992 * 109.47212 * 59.99169 * 1 2 3 19 19 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46794 * 240.00467 * 2 1 3 21 21 H 1.08992 * 109.47212 * 120.00831 * 2 1 3 22 22 H 1.08002 * 126.75841 * 359.97438 * 4 3 2 23 23 H 0.97003 * 120.00292 * 179.97438 * 9 8 6 24 24 H 1.07997 * 126.03424 * 180.02562 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2012 2.1844 1.0921 5 6 2.7103 3.4801 0.6204 6 6 3.0417 4.6046 1.4099 7 1 2.9285 4.5633 2.4831 8 6 3.5158 5.7694 0.8020 9 7 3.6527 5.8197 -0.5004 10 14 3.9546 7.2554 1.8454 11 1 5.0284 6.8881 2.8031 12 1 4.4290 8.3545 0.9667 13 1 2.7547 7.7052 2.5957 14 6 2.7978 3.3708 -0.7652 15 7 2.3852 2.1337 -1.1111 16 1 2.3478 1.7967 -2.0199 17 1 -0.3632 0.5138 0.8901 18 1 -0.3633 0.5139 -0.8898 19 1 -0.3633 -1.0276 0.0005 20 1 1.8934 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8898 22 1 2.0056 1.9008 2.1156 23 1 3.9816 6.6287 -0.9226 24 1 3.1370 4.1402 -1.4430 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261151343.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = 22.800613 kcal Electronic energy + Delta-G solvation = -8895.773474 eV Core-core repulsion = 7195.110982 eV Total energy + Delta-G solvation = -1700.662492 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 165.085 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.97752 -33.48896 -32.44047 -29.34835 -26.83827 -24.69453 -22.17874 -19.19265 -18.54764 -16.24716 -15.54659 -14.37793 -13.71306 -13.25786 -12.44296 -12.32222 -11.80187 -11.39011 -11.17097 -10.97416 -10.85806 -10.59557 -10.47967 -9.54741 -9.37150 -9.06697 -7.14126 -6.40642 -6.21156 -3.79312 3.23563 3.28608 3.33032 3.87438 4.29059 4.49539 4.91761 5.57606 5.63912 5.82192 5.93866 6.20189 6.34143 6.44030 6.65334 7.09513 7.32802 7.57383 7.68933 8.16989 8.31650 8.61096 9.07036 9.35971 9.48341 9.54567 10.78778 Molecular weight = 165.08amu Principal moments of inertia in cm(-1) A = 0.109230 B = 0.012527 C = 0.011651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.277642 B = 2234.702610 C = 2402.634016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.024 4.024 4 C -0.248 4.248 5 C 0.005 3.995 6 C -0.427 4.427 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.847 5.847 10 Si 0.911 3.089 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C -0.109 4.109 15 N -0.572 5.572 16 H 0.385 0.615 17 H 0.057 0.943 18 H 0.048 0.952 19 H 0.045 0.955 20 H 0.051 0.949 21 H 0.068 0.932 22 H 0.106 0.894 23 H 0.267 0.733 24 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 -5.505 -0.893 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.277 4.277 5 C 0.000 4.000 6 C -0.462 4.462 7 H 0.082 0.918 8 C -0.153 4.153 9 N -0.480 5.480 10 Si 0.738 3.262 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.198 1.198 14 C -0.237 4.237 15 N -0.169 5.169 16 H 0.217 0.783 17 H 0.076 0.924 18 H 0.067 0.933 19 H 0.064 0.936 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.124 0.876 23 H 0.078 0.922 24 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.460 -5.322 -1.153 5.976 hybrid contribution 0.219 0.651 0.093 0.693 sum -2.241 -4.671 -1.060 5.288 Atomic orbital electron populations 1.21756 0.96032 1.00095 1.02158 1.19870 0.94977 0.92296 1.01145 1.19605 1.11880 0.94063 0.87931 1.21528 1.14497 0.96461 0.95257 1.18411 0.98712 0.91628 0.91234 1.18720 1.37978 0.95697 0.93764 0.91824 1.25567 0.95314 0.99473 0.94940 1.69505 1.40963 1.27884 1.09653 0.86338 0.79122 0.80767 0.80010 1.19779 1.20989 1.19793 1.23202 1.15791 0.86873 0.97788 1.41383 1.56048 1.13390 1.06058 0.78349 0.92419 0.93273 0.93598 0.93032 0.91364 0.87562 0.92207 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.90 37.16 0.37 -1.79 14 2 C -0.04 -0.76 6.45 -27.88 -0.18 -0.94 14 3 C -0.02 -0.53 6.36 -81.83 -0.52 -1.05 14 4 C -0.25 -6.40 10.97 -37.42 -0.41 -6.81 14 5 C 0.01 0.16 6.12 -104.79 -0.64 -0.48 14 6 C -0.43 -12.61 9.44 -37.86 -0.36 -12.96 14 7 H 0.06 1.81 7.84 -52.49 -0.41 1.40 14 8 C 0.05 1.52 5.49 -17.35 -0.10 1.43 14 9 N -0.85 -23.89 10.38 55.53 0.58 -23.32 14 10 Si 0.91 20.99 29.56 -169.99 -5.02 15.96 14 11 H -0.27 -6.20 7.11 56.52 0.40 -5.79 14 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 14 14 C -0.11 -2.97 10.94 -15.81 -0.17 -3.15 14 15 N -0.57 -13.12 5.91 -8.45 -0.05 -13.17 14 16 H 0.38 7.30 8.96 -40.82 -0.37 6.94 14 17 H 0.06 0.92 8.14 -51.93 -0.42 0.49 14 18 H 0.05 0.75 8.14 -51.93 -0.42 0.33 14 19 H 0.04 0.56 8.14 -51.93 -0.42 0.14 14 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 14 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 14 22 H 0.11 2.56 8.06 -52.49 -0.42 2.14 14 23 H 0.27 6.99 8.30 -40.82 -0.34 6.65 14 24 H 0.18 5.14 5.78 -52.49 -0.30 4.84 14 LS Contribution 212.50 15.07 3.20 3.20 Total: -1.00 -30.64 212.50 -6.06 -36.70 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -2.75 Total: 6.38 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.01 Total: -25.76 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.53 Total: -36.49 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -30.64 -6.06 -36.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151343.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.501 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds