Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50691 * 109.47179 * 2 1 4 4 C 1.34325 * 125.30373 * 85.00489 * 3 2 1 5 5 C 1.46981 * 106.48715 * 179.72197 * 4 3 2 6 6 C 1.41343 * 127.10724 * 180.21480 * 5 4 3 7 7 H 1.07993 * 120.00772 * 0.02562 * 6 5 4 8 8 C 1.39678 * 119.99443 * 180.02562 * 6 5 4 9 9 N 1.31050 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99739 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46886 * 60.00503 * 10 8 6 12 12 H 1.48503 * 109.46818 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47365 * 300.00046 * 10 8 6 14 14 C 1.39265 * 105.77659 * 0.24470 * 5 4 3 15 15 N 1.34917 * 107.92658 * 359.97438 * 14 5 4 16 16 H 0.96998 * 124.79009 * 180.02562 * 15 14 5 17 17 H 1.09001 * 109.46343 * 299.99347 * 1 2 3 18 18 H 1.08992 * 109.47212 * 59.99169 * 1 2 3 19 19 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46794 * 240.00467 * 2 1 3 21 21 H 1.08992 * 109.47212 * 120.00831 * 2 1 3 22 22 H 1.08002 * 126.75841 * 359.97438 * 4 3 2 23 23 H 0.97003 * 120.00292 * 179.97438 * 9 8 6 24 24 H 1.07997 * 126.03424 * 180.02562 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2012 2.1844 1.0921 5 6 2.7103 3.4801 0.6204 6 6 3.0417 4.6046 1.4099 7 1 2.9285 4.5633 2.4831 8 6 3.5158 5.7694 0.8020 9 7 3.6527 5.8197 -0.5004 10 14 3.9546 7.2554 1.8454 11 1 5.0284 6.8881 2.8031 12 1 4.4290 8.3545 0.9667 13 1 2.7547 7.7052 2.5957 14 6 2.7978 3.3708 -0.7652 15 7 2.3852 2.1337 -1.1111 16 1 2.3478 1.7967 -2.0199 17 1 -0.3632 0.5138 0.8901 18 1 -0.3633 0.5139 -0.8898 19 1 -0.3633 -1.0276 0.0005 20 1 1.8934 -0.5138 -0.8901 21 1 1.8934 -0.5139 0.8898 22 1 2.0056 1.9008 2.1156 23 1 3.9816 6.6287 -0.9226 24 1 3.1370 4.1402 -1.4430 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261151343.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = 3.378355 kcal Electronic energy + Delta-G solvation = -8896.615687 eV Core-core repulsion = 7195.110982 eV Total energy + Delta-G solvation = -1701.504704 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 165.085 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.89757 -35.45758 -34.00994 -31.38427 -28.68820 -26.67571 -23.70387 -21.25502 -20.46099 -18.13534 -17.63843 -16.22296 -15.08264 -14.86061 -14.31620 -14.17972 -13.58727 -13.09298 -12.96446 -12.79407 -12.64755 -12.17271 -11.87864 -11.57800 -11.33844 -11.12184 -9.17690 -8.39932 -8.29548 -5.97061 1.41104 1.41206 1.53365 1.99461 2.35315 2.40691 3.14118 3.66823 4.21977 4.33363 4.60957 4.91708 5.06705 5.09943 5.12617 5.34574 5.43843 5.44190 5.72090 6.10066 6.24616 6.58546 6.99689 7.26747 7.40802 7.58435 8.70377 Molecular weight = 165.08amu Principal moments of inertia in cm(-1) A = 0.109230 B = 0.012527 C = 0.011651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.277642 B = 2234.702610 C = 2402.634016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C 0.009 3.991 4 C -0.291 4.291 5 C -0.040 4.040 6 C -0.471 4.471 7 H 0.057 0.943 8 C 0.008 3.992 9 N -0.869 5.869 10 Si 0.986 3.014 11 H -0.267 1.267 12 H -0.271 1.271 13 H -0.267 1.267 14 C -0.133 4.133 15 N -0.562 5.562 16 H 0.405 0.595 17 H 0.043 0.957 18 H 0.044 0.956 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.112 0.888 23 H 0.274 0.726 24 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -6.382 -1.012 7.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.319 4.319 5 C -0.045 4.045 6 C -0.505 4.505 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.502 5.502 10 Si 0.809 3.191 11 H -0.192 1.192 12 H -0.196 1.196 13 H -0.192 1.192 14 C -0.261 4.261 15 N -0.160 5.160 16 H 0.241 0.759 17 H 0.062 0.938 18 H 0.063 0.937 19 H 0.101 0.899 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.130 0.870 23 H 0.084 0.916 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.789 -6.222 -1.303 6.942 hybrid contribution 0.288 0.819 0.087 0.873 sum -2.500 -5.403 -1.216 6.076 Atomic orbital electron populations 1.21705 0.94239 1.02322 1.01319 1.20068 0.96347 0.88482 1.03304 1.20375 1.07690 0.95860 0.86500 1.21732 1.17060 0.96331 0.96818 1.18954 0.99904 0.93156 0.92498 1.19033 1.40264 0.97404 0.93794 0.92478 1.26492 0.94571 1.02239 0.96387 1.69611 1.40677 1.28902 1.11008 0.85191 0.78948 0.76713 0.78285 1.19156 1.19552 1.19194 1.22908 1.17501 0.88502 0.97161 1.41302 1.55066 1.12167 1.07472 0.75917 0.93780 0.93685 0.89857 0.90209 0.89878 0.86981 0.91571 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.90 71.98 0.71 -2.98 14 2 C -0.04 -1.33 6.45 29.85 0.19 -1.14 14 3 C 0.01 0.38 6.36 40.91 0.26 0.64 14 4 C -0.29 -15.17 10.97 23.67 0.26 -14.91 14 5 C -0.04 -2.37 6.12 -19.98 -0.12 -2.49 14 6 C -0.47 -28.73 9.44 23.38 0.22 -28.51 14 7 H 0.06 3.39 7.84 -2.91 -0.02 3.37 14 8 C 0.01 0.48 5.49 85.16 0.47 0.95 14 9 N -0.87 -49.92 10.38 21.79 0.23 -49.70 14 10 Si 0.99 43.40 29.56 68.60 2.03 45.43 14 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 14 12 H -0.27 -11.22 7.11 99.48 0.71 -10.52 14 13 H -0.27 -11.43 7.11 99.48 0.71 -10.73 14 14 C -0.13 -7.40 10.94 84.47 0.92 -6.48 14 15 N -0.56 -25.32 5.91 -180.65 -1.07 -26.39 14 16 H 0.41 14.68 8.96 -92.71 -0.83 13.85 14 17 H 0.04 1.29 8.14 -2.39 -0.02 1.27 14 18 H 0.04 1.23 8.14 -2.39 -0.02 1.21 14 19 H 0.08 1.65 8.14 -2.39 -0.02 1.63 14 20 H 0.08 2.04 8.14 -2.38 -0.02 2.02 14 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 14 22 H 0.11 5.50 8.06 -2.91 -0.02 5.48 14 23 H 0.27 14.43 8.30 -92.71 -0.77 13.66 14 24 H 0.17 9.78 5.78 -2.91 -0.02 9.76 14 Total: -1.00 -67.41 212.50 4.46 -62.95 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.36 Total: 22.64 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 2.91 Total: -54.93 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -0.84 Total: -76.08 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.41 4.46 -62.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151343.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.330 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds