Wall clock time and date at job start Mon Mar 30 2020 01:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47311 * 2 1 4 4 C 1.40132 * 126.00571 * 269.99728 * 3 2 1 5 5 N 1.30939 * 108.40012 * 179.74107 * 4 3 2 6 6 N 1.40098 * 108.26658 * 0.40648 * 5 4 3 7 7 C 1.37395 * 126.11999 * 179.85540 * 6 5 4 8 8 H 1.08002 * 119.99706 * 179.68520 * 7 6 5 9 9 C 1.38990 * 120.00047 * 359.96643 * 7 6 5 10 10 N 1.31294 * 119.99879 * 359.72348 * 9 7 6 11 11 Si 1.86801 * 120.00042 * 179.72385 * 9 7 6 12 12 H 1.48504 * 109.46920 * 59.99986 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47038 * 299.99755 * 11 9 7 15 15 C 1.35236 * 126.00640 * 89.99754 * 3 2 1 16 16 H 1.09006 * 109.46955 * 60.00561 * 1 2 3 17 17 H 1.08999 * 109.47343 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.47282 * 300.00097 * 1 2 3 19 19 H 1.09001 * 109.47282 * 239.99903 * 2 1 3 20 20 H 1.09000 * 109.46894 * 120.00156 * 2 1 3 21 21 H 1.08003 * 125.80055 * 0.02562 * 4 3 2 22 22 H 0.96995 * 119.99901 * 180.02562 * 10 9 7 23 23 H 1.07994 * 126.21078 * 0.02562 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3070 2.1974 -1.1336 5 7 2.7178 3.3760 -0.7376 6 7 2.7284 3.3894 0.6633 7 6 3.1011 4.4447 1.4603 8 1 3.0664 4.3479 2.5355 9 6 3.5171 5.6386 0.8830 10 7 3.5592 5.7562 -0.4239 11 14 4.0164 7.0759 1.9667 12 1 5.1599 6.6748 2.8251 13 1 4.4172 8.2233 1.1134 14 1 2.8696 7.4720 2.8230 15 6 2.2973 2.1704 1.0940 16 1 -0.3633 0.5138 -0.8901 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8933 -0.5139 0.8900 21 1 2.1943 1.8796 -2.1596 22 1 3.8499 6.5892 -0.8268 23 1 2.1877 1.8593 2.1223 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157789.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:58 Heat of formation + Delta-G solvation = 44.370501 kcal Electronic energy + Delta-G solvation = -9050.491976 eV Core-core repulsion = 7285.338913 eV Total energy + Delta-G solvation = -1765.153062 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.32346 -35.75297 -34.20514 -32.11161 -29.34942 -26.92263 -23.76197 -22.40977 -20.55416 -19.01307 -17.39571 -16.06611 -15.29554 -15.02844 -14.78272 -14.48264 -13.51677 -13.17562 -13.11787 -12.81548 -12.68498 -12.24262 -12.02172 -11.60684 -11.22975 -10.53819 -10.06575 -8.95475 -8.45634 -6.26096 1.33247 1.37692 1.53616 1.81344 2.14569 2.39813 2.92167 3.09447 4.32752 4.42162 4.51773 4.78498 4.82366 4.99321 5.11998 5.16879 5.33550 5.44988 5.56175 5.85444 5.99189 6.38546 6.81125 7.52870 7.74261 8.54373 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.111729 B = 0.012988 C = 0.012091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 250.545564 B = 2155.305522 C = 2315.266798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.265 4.265 4 C -0.064 4.064 5 N -0.318 5.318 6 N -0.184 5.184 7 C -0.367 4.367 8 H 0.131 0.869 9 C -0.006 4.006 10 N -0.829 5.829 11 Si 1.017 2.983 12 H -0.255 1.255 13 H -0.275 1.275 14 H -0.255 1.255 15 C -0.067 4.067 16 H 0.039 0.961 17 H 0.073 0.927 18 H 0.040 0.960 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.170 0.830 22 H 0.275 0.725 23 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -4.515 3.727 6.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.279 4.279 4 C -0.239 4.239 5 N -0.148 5.148 6 N 0.047 4.953 7 C -0.497 4.497 8 H 0.149 0.851 9 C -0.216 4.216 10 N -0.457 5.457 11 Si 0.836 3.164 12 H -0.179 1.179 13 H -0.199 1.199 14 H -0.179 1.179 15 C -0.215 4.215 16 H 0.059 0.941 17 H 0.092 0.908 18 H 0.060 0.940 19 H 0.085 0.915 20 H 0.085 0.915 21 H 0.187 0.813 22 H 0.085 0.915 23 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.791 -3.173 3.191 4.843 hybrid contribution -0.028 -0.047 0.345 0.349 sum -1.819 -3.219 3.535 5.116 Atomic orbital electron populations 1.21699 0.95352 1.01461 1.00828 1.19660 0.95351 0.89849 1.01687 1.19978 1.17118 0.99739 0.91043 1.23927 1.06882 0.93421 0.99658 1.78023 1.26431 1.20437 0.89916 1.45124 1.37373 1.08860 1.03920 1.20494 1.47033 0.91034 0.91172 0.85136 1.26819 0.95124 1.02075 0.97620 1.70377 1.36789 1.26853 1.11713 0.84692 0.79502 0.74980 0.77242 1.17911 1.19936 1.17948 1.22509 1.11250 0.87788 0.99985 0.94137 0.90766 0.94042 0.91515 0.91520 0.81274 0.91526 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.89 71.98 0.71 -3.28 14 2 C -0.03 -0.90 6.42 29.85 0.19 -0.71 14 3 C -0.27 -12.07 5.36 -20.10 -0.11 -12.18 14 4 C -0.06 -3.25 11.96 85.29 1.02 -2.23 14 5 N -0.32 -19.13 10.42 -56.79 -0.59 -19.72 14 6 N -0.18 -10.68 3.74 -190.44 -0.71 -11.39 14 7 C -0.37 -20.51 10.26 84.00 0.86 -19.64 14 8 H 0.13 6.48 7.83 -2.91 -0.02 6.45 14 9 C -0.01 -0.30 5.50 84.95 0.47 0.16 14 10 N -0.83 -48.86 11.82 21.66 0.26 -48.60 14 11 Si 1.02 40.04 29.55 68.60 2.03 42.07 14 12 H -0.26 -9.43 7.11 99.48 0.71 -8.73 14 13 H -0.27 -10.55 7.11 99.48 0.71 -9.84 14 14 H -0.26 -9.46 7.11 99.48 0.71 -8.75 14 15 C -0.07 -3.31 11.37 83.31 0.95 -2.36 14 16 H 0.04 1.25 8.14 -2.38 -0.02 1.23 14 17 H 0.07 1.69 8.14 -2.39 -0.02 1.67 14 18 H 0.04 1.26 8.14 -2.39 -0.02 1.24 14 19 H 0.07 2.04 8.14 -2.39 -0.02 2.02 14 20 H 0.07 2.01 8.14 -2.39 -0.02 1.99 14 21 H 0.17 7.50 8.06 -2.91 -0.02 7.47 14 22 H 0.28 14.88 8.31 -92.71 -0.77 14.11 14 23 H 0.17 7.01 8.06 -2.91 -0.02 6.99 14 Total: -1.00 -68.27 210.56 6.26 -62.01 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.18 Total: 15.86 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 4.09 Total: -40.23 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.05 Total: -79.71 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -68.27 6.26 -62.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157789.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.384 kcal (2) G-P(sol) polarization free energy of solvation -68.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds