Wall clock time and date at job start Mon Mar 30 2020 02:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86806 * 120.00211 * 2 1 4 4 H 1.48494 * 109.47483 * 89.99406 * 3 2 1 5 5 H 1.48498 * 109.47046 * 210.00048 * 3 2 1 6 6 H 1.48502 * 109.46740 * 329.99708 * 3 2 1 7 7 C 1.40239 * 120.00092 * 179.71714 * 2 1 3 8 8 H 1.07996 * 120.00001 * 11.70232 * 7 2 1 9 9 C 1.39999 * 120.00137 * 191.70518 * 7 2 1 10 10 N 1.32984 * 125.96270 * 7.95163 * 9 7 2 11 11 C 1.32758 * 109.22341 * 179.82906 * 10 9 7 12 12 C 1.36221 * 108.61999 * 0.44329 * 11 10 9 13 13 C 1.50694 * 126.40106 * 179.71330 * 12 11 10 14 14 N 1.46895 * 109.47233 * 265.02028 * 13 12 11 15 15 N 1.36415 * 107.19047 * 359.72959 * 12 11 10 16 16 H 0.97009 * 126.55134 * 180.02562 * 15 12 11 17 17 H 0.97001 * 120.00251 * 174.74829 * 1 2 3 18 18 H 1.08002 * 125.69031 * 180.20708 * 11 10 9 19 19 H 1.09001 * 109.47211 * 25.02521 * 13 12 11 20 20 H 1.09001 * 109.47013 * 145.02010 * 13 12 11 21 21 H 1.00902 * 111.00310 * 180.02562 * 14 13 12 22 22 H 1.00901 * 111.00140 * 303.95645 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4883 2.0466 1.4000 5 1 3.5384 1.4401 -0.7000 6 1 1.4383 2.6526 -0.7001 7 6 2.0080 -1.2145 0.0060 8 1 1.4849 -2.1410 -0.1791 9 6 3.3862 -1.2259 0.2520 10 7 4.1192 -0.1856 0.6380 11 6 5.3827 -0.5686 0.7767 12 6 5.4733 -1.8911 0.4627 13 6 6.7248 -2.7303 0.4786 14 7 7.3054 -2.7693 -0.8702 15 7 4.2194 -2.3135 0.1308 16 1 3.9641 -3.2097 -0.1387 17 1 -0.4850 -0.8365 -0.0769 18 1 6.2028 0.0638 1.0832 19 1 7.4450 -2.2957 1.1718 20 1 6.4790 -3.7432 0.7978 21 1 8.1463 -3.3269 -0.8860 22 1 6.6344 -3.1085 -1.5431 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261315410.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:14 Heat of formation + Delta-G solvation = 33.366362 kcal Electronic energy + Delta-G solvation = -9188.858349 eV Core-core repulsion = 7357.802200 eV Total energy + Delta-G solvation = -1831.056149 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.20942 -34.42088 -33.31819 -30.93550 -29.13640 -25.85541 -22.71269 -20.08946 -19.75143 -17.76202 -16.16990 -15.27178 -14.45636 -13.74621 -13.19917 -13.00825 -12.95184 -12.15290 -11.69546 -11.49484 -10.70390 -10.21155 -9.60285 -9.00530 -8.66847 -8.41408 -7.84138 -7.37300 -7.12838 -4.51218 3.21944 3.68311 3.79218 4.14724 4.40724 4.50674 4.58220 5.09178 5.41207 5.58407 5.71118 6.12789 6.24166 6.86797 7.28929 7.37133 7.61978 7.62714 7.76617 8.05933 8.38356 8.76601 9.05818 9.68674 10.23020 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.085420 B = 0.015649 C = 0.013989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.713259 B = 1788.829283 C = 2001.030992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.064 3.936 3 Si 1.123 2.877 4 H -0.285 1.285 5 H -0.260 1.260 6 H -0.323 1.323 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.377 3.623 10 N -0.592 5.592 11 C 0.030 3.970 12 C -0.140 4.140 13 C 0.160 3.840 14 N -0.847 5.847 15 N -0.615 5.615 16 H 0.396 0.604 17 H 0.279 0.721 18 H 0.141 0.859 19 H 0.079 0.921 20 H 0.014 0.986 21 H 0.330 0.670 22 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -4.658 -0.457 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.156 4.156 3 Si 0.953 3.047 4 H -0.211 1.211 5 H -0.186 1.186 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.093 0.907 9 C 0.134 3.866 10 N -0.319 5.319 11 C -0.122 4.122 12 C -0.252 4.252 13 C 0.029 3.971 14 N -0.376 5.376 15 N -0.223 5.223 16 H 0.230 0.770 17 H 0.090 0.910 18 H 0.159 0.841 19 H 0.097 0.903 20 H 0.032 0.968 21 H 0.142 0.858 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.934 -1.499 -0.118 8.075 hybrid contribution 0.105 -4.278 -0.228 4.285 sum 8.039 -5.777 -0.346 9.905 Atomic orbital electron populations 1.70623 1.07840 1.32341 1.34197 1.27285 0.95113 1.04858 0.88367 0.82604 0.73545 0.70145 0.78412 1.21118 1.18599 1.25475 1.19353 0.89332 0.97001 1.50038 0.90721 1.20257 0.91922 0.80600 0.93830 1.69896 1.03438 1.27299 1.31224 1.21617 0.94819 0.91706 1.04084 1.20297 0.85912 0.96813 1.22207 1.19732 0.92177 0.95168 0.89995 1.58842 1.09709 1.61556 1.07542 1.42984 1.07282 1.11800 1.60211 0.76971 0.90995 0.84128 0.90313 0.96803 0.85802 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.36 13.65 55.56 0.76 -22.60 14 2 C 0.06 1.81 5.52 -17.29 -0.10 1.72 14 3 Si 1.12 28.87 26.36 -169.99 -4.48 24.39 14 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 14 5 H -0.26 -6.85 6.27 56.52 0.35 -6.50 14 6 H -0.32 -8.07 7.11 56.52 0.40 -7.66 14 7 C -0.52 -14.47 9.86 -38.17 -0.38 -14.84 14 8 H 0.07 2.06 8.06 -52.49 -0.42 1.64 14 9 C 0.38 10.11 7.31 -155.60 -1.14 8.97 14 10 N -0.59 -15.98 6.41 -12.72 -0.08 -16.07 14 11 C 0.03 0.70 11.77 -17.88 -0.21 0.49 14 12 C -0.14 -2.98 6.77 -81.28 -0.55 -3.53 14 13 C 0.16 2.59 7.34 -4.98 -0.04 2.55 14 14 N -0.85 -12.41 9.61 -11.41 -0.11 -12.52 14 15 N -0.62 -13.89 6.25 -8.21 -0.05 -13.94 14 16 H 0.40 7.73 8.96 -40.82 -0.37 7.37 14 17 H 0.28 7.57 8.73 -40.82 -0.36 7.21 14 18 H 0.14 2.93 8.06 -52.49 -0.42 2.50 14 19 H 0.08 1.18 8.14 -51.93 -0.42 0.76 14 20 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 14 21 H 0.33 3.75 9.08 -39.29 -0.36 3.39 14 22 H 0.34 4.93 8.99 -39.29 -0.35 4.58 14 LS Contribution 199.49 15.07 3.01 3.01 Total: -1.00 -30.92 199.49 -5.33 -36.25 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -1.97 Total: 6.12 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.41 Total: -4.64 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.52 Total: -65.13 kcal Atomic # 14 Polarization: 28.87 SS G_CDS: -4.48 Total: 24.39 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -30.92 -5.33 -36.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315410.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.619 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds