Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86806 * 120.00211 * 2 1 4 4 H 1.48494 * 109.47483 * 89.99406 * 3 2 1 5 5 H 1.48498 * 109.47046 * 210.00048 * 3 2 1 6 6 H 1.48502 * 109.46740 * 329.99708 * 3 2 1 7 7 C 1.40239 * 120.00092 * 179.71714 * 2 1 3 8 8 H 1.07996 * 120.00001 * 11.70232 * 7 2 1 9 9 C 1.39999 * 120.00137 * 191.70518 * 7 2 1 10 10 N 1.32984 * 125.96270 * 7.95163 * 9 7 2 11 11 C 1.32758 * 109.22341 * 179.82906 * 10 9 7 12 12 C 1.36221 * 108.61999 * 0.44329 * 11 10 9 13 13 C 1.50694 * 126.40106 * 179.71330 * 12 11 10 14 14 N 1.46895 * 109.47233 * 265.02028 * 13 12 11 15 15 N 1.36415 * 107.19047 * 359.72959 * 12 11 10 16 16 H 0.97009 * 126.55134 * 180.02562 * 15 12 11 17 17 H 0.97001 * 120.00251 * 174.74829 * 1 2 3 18 18 H 1.08002 * 125.69031 * 180.20708 * 11 10 9 19 19 H 1.09001 * 109.47211 * 25.02521 * 13 12 11 20 20 H 1.09001 * 109.47013 * 145.02010 * 13 12 11 21 21 H 1.00902 * 111.00310 * 180.02562 * 14 13 12 22 22 H 1.00901 * 111.00140 * 303.95645 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4883 2.0466 1.4000 5 1 3.5384 1.4401 -0.7000 6 1 1.4383 2.6526 -0.7001 7 6 2.0080 -1.2145 0.0060 8 1 1.4849 -2.1410 -0.1791 9 6 3.3862 -1.2259 0.2520 10 7 4.1192 -0.1856 0.6380 11 6 5.3827 -0.5686 0.7767 12 6 5.4733 -1.8911 0.4627 13 6 6.7248 -2.7303 0.4786 14 7 7.3054 -2.7693 -0.8702 15 7 4.2194 -2.3135 0.1308 16 1 3.9641 -3.2097 -0.1387 17 1 -0.4850 -0.8365 -0.0769 18 1 6.2028 0.0638 1.0832 19 1 7.4450 -2.2957 1.1718 20 1 6.4790 -3.7432 0.7978 21 1 8.1463 -3.3269 -0.8860 22 1 6.6344 -3.1085 -1.5431 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261315410.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = 9.198520 kcal Electronic energy + Delta-G solvation = -9189.906345 eV Core-core repulsion = 7357.802200 eV Total energy + Delta-G solvation = -1832.104145 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.10886 -35.96703 -35.18384 -32.83806 -30.98935 -27.56531 -24.38123 -22.11136 -21.57060 -19.73043 -17.93130 -16.68863 -15.96819 -15.64946 -15.14352 -14.79347 -14.69217 -13.80256 -13.66931 -12.94467 -12.75331 -12.17230 -11.69165 -11.10366 -10.54638 -9.89927 -9.56917 -9.37601 -9.16121 -6.56259 1.30468 1.62146 1.81126 2.10291 2.42757 2.50948 2.75722 3.30982 3.91649 4.23655 4.30232 4.43673 4.81825 5.00296 5.42432 5.51706 5.83253 6.03758 6.18887 6.43178 6.64090 6.74083 7.17030 7.75614 8.12183 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.085420 B = 0.015649 C = 0.013989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.713259 B = 1788.829283 C = 2001.030992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.033 3.967 3 Si 1.160 2.840 4 H -0.290 1.290 5 H -0.271 1.271 6 H -0.315 1.315 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.347 3.653 10 N -0.612 5.612 11 C -0.017 4.017 12 C -0.103 4.103 13 C 0.163 3.837 14 N -0.853 5.853 15 N -0.601 5.601 16 H 0.411 0.589 17 H 0.277 0.723 18 H 0.165 0.835 19 H 0.098 0.902 20 H 0.036 0.964 21 H 0.354 0.646 22 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 -5.535 -0.428 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.182 4.182 3 Si 0.989 3.011 4 H -0.217 1.217 5 H -0.197 1.197 6 H -0.246 1.246 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.100 3.900 10 N -0.340 5.340 11 C -0.166 4.166 12 C -0.216 4.216 13 C 0.032 3.968 14 N -0.385 5.385 15 N -0.208 5.208 16 H 0.248 0.752 17 H 0.088 0.912 18 H 0.182 0.818 19 H 0.116 0.884 20 H 0.054 0.946 21 H 0.168 0.832 22 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.119 -2.409 -0.096 10.402 hybrid contribution -0.333 -4.152 -0.228 4.172 sum 9.786 -6.561 -0.325 11.786 Atomic orbital electron populations 1.70639 1.08095 1.32299 1.36547 1.27927 0.95422 1.06541 0.88359 0.82071 0.72403 0.68814 0.77823 1.21663 1.19746 1.24569 1.19346 0.90323 0.96631 1.51579 0.91657 1.20174 0.92019 0.82037 0.95785 1.69776 1.05076 1.28158 1.30950 1.22156 0.94454 0.93474 1.06530 1.21161 0.86784 0.96651 1.17015 1.19841 0.90099 0.95462 0.91437 1.58686 1.10642 1.62657 1.06476 1.43044 1.07422 1.11921 1.58440 0.75159 0.91179 0.81790 0.88389 0.94563 0.83153 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.88 13.65 21.88 0.30 -48.58 14 2 C 0.03 1.91 5.52 85.35 0.47 2.38 14 3 Si 1.16 59.33 26.36 68.60 1.81 61.13 14 4 H -0.29 -14.85 7.11 99.48 0.71 -14.14 14 5 H -0.27 -14.18 6.27 99.48 0.62 -13.55 14 6 H -0.31 -15.38 7.11 99.48 0.71 -14.67 14 7 C -0.54 -30.47 9.86 23.18 0.23 -30.25 14 8 H 0.07 3.68 8.06 -2.91 -0.02 3.66 14 9 C 0.35 18.38 7.31 133.59 0.98 19.36 14 10 N -0.61 -32.52 6.41 -194.16 -1.25 -33.76 14 11 C -0.02 -0.76 11.77 84.08 0.99 0.23 14 12 C -0.10 -4.04 6.77 41.37 0.28 -3.76 14 13 C 0.16 4.49 7.34 85.56 0.63 5.12 14 14 N -0.85 -21.20 9.61 -190.02 -1.83 -23.02 14 15 N -0.60 -25.83 6.25 -179.88 -1.12 -26.96 14 16 H 0.41 15.05 8.96 -92.70 -0.83 14.22 14 17 H 0.28 15.43 8.73 -92.71 -0.81 14.62 14 18 H 0.16 6.40 8.06 -2.91 -0.02 6.37 14 19 H 0.10 2.42 8.14 -2.39 -0.02 2.40 14 20 H 0.04 0.88 8.14 -2.39 -0.02 0.86 14 21 H 0.35 6.35 9.08 -89.69 -0.81 5.53 14 22 H 0.34 8.53 8.99 -89.69 -0.81 7.72 14 Total: -1.00 -65.24 199.49 0.18 -65.07 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -1.31 Total: 13.03 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 3.57 Total: -6.91 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -3.90 Total: -132.32 kcal Atomic # 14 Polarization: 59.33 SS G_CDS: 1.81 Total: 61.13 kcal Total: -65.24 0.18 -65.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261315410.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.266 kcal (2) G-P(sol) polarization free energy of solvation -65.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds