Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39760 * 126.32010 * 2 1 4 4 C 1.39555 * 106.45645 * 179.97438 * 3 2 1 5 5 C 1.39748 * 126.20509 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.40163 * 119.99790 * 180.02562 * 5 4 3 8 8 N 1.30800 * 120.00189 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46915 * 60.00305 * 9 7 5 11 11 H 1.48499 * 109.46609 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47031 * 300.00033 * 9 7 5 13 13 O 1.35088 * 107.58594 * 0.02562 * 4 3 2 14 14 C 1.34241 * 109.39006 * 359.97438 * 13 4 3 15 15 C 1.50691 * 125.39109 * 179.97438 * 14 13 4 16 16 H 1.08999 * 109.46988 * 90.03055 * 1 2 3 17 17 H 1.09004 * 109.46474 * 210.02443 * 1 2 3 18 18 H 1.08995 * 109.47321 * 330.02481 * 1 2 3 19 19 H 1.08001 * 126.77246 * 0.23952 * 3 2 1 20 20 H 0.97001 * 120.00026 * 180.02562 * 8 7 5 21 21 H 1.09005 * 109.47176 * 0.03062 * 15 14 13 22 22 H 1.08999 * 109.47071 * 120.02858 * 15 14 13 23 23 H 1.08996 * 109.47429 * 240.02787 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3348 1.1261 0.0000 4 6 3.6474 0.6519 0.0006 5 6 4.8069 1.4320 0.0003 6 1 4.7328 2.5095 0.0000 7 6 6.0659 0.8160 0.0004 8 7 6.1555 -0.4890 0.0014 9 14 7.6158 1.8587 0.0008 10 1 7.6356 2.7157 1.2134 11 1 8.8080 0.9733 0.0015 12 1 7.6359 2.7159 -1.2116 13 8 3.5937 -0.6979 0.0004 14 6 2.3107 -1.0929 0.0002 15 6 1.8381 -2.5238 -0.0006 16 1 -0.3633 -0.0005 -1.0277 17 1 -0.3632 -0.8898 0.5142 18 1 -0.3634 0.8902 0.5134 19 1 2.0208 2.1594 0.0036 20 1 7.0269 -0.9152 0.0018 21 1 2.6999 -3.1912 -0.0005 22 1 1.2358 -2.7080 0.8890 23 1 1.2366 -2.7073 -0.8909 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300843119.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -38.174110 kcal Electronic energy + Delta-G solvation = -9137.176160 eV Core-core repulsion = 7336.150944 eV Total energy + Delta-G solvation = -1801.025216 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.29965 -35.72767 -34.47732 -32.28781 -29.76753 -28.10400 -24.80554 -21.66058 -20.79778 -18.63889 -17.12216 -16.32312 -16.11084 -14.98439 -14.27814 -13.91019 -13.82503 -13.48396 -13.14820 -12.93311 -12.87936 -12.79116 -12.54496 -12.01978 -11.60606 -11.30661 -9.91214 -9.01042 -8.76079 -6.42786 1.20374 1.36146 1.52021 1.68134 2.12508 2.16994 3.05808 3.19330 4.47790 4.50572 4.61497 4.75703 4.82478 4.96492 5.00639 5.07861 5.14590 5.35522 5.57797 5.71738 6.02798 6.39106 6.65162 6.72436 7.28763 8.26791 Molecular weight = 166.07amu Principal moments of inertia in cm(-1) A = 0.090297 B = 0.014737 C = 0.012787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.014073 B = 1899.564960 C = 2189.133128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.152 4.152 3 C -0.421 4.421 4 C 0.164 3.836 5 C -0.485 4.485 6 H 0.108 0.892 7 C 0.020 3.980 8 N -0.821 5.821 9 Si 1.008 2.992 10 H -0.254 1.254 11 H -0.264 1.264 12 H -0.253 1.253 13 O -0.186 6.186 14 C -0.185 4.185 15 C -0.038 4.038 16 H 0.067 0.933 17 H 0.073 0.927 18 H 0.060 0.940 19 H 0.115 0.885 20 H 0.293 0.707 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -0.503 0.000 2.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.153 4.153 3 C -0.442 4.442 4 C 0.112 3.888 5 C -0.514 4.514 6 H 0.126 0.874 7 C -0.196 4.196 8 N -0.448 5.448 9 Si 0.826 3.174 10 H -0.177 1.177 11 H -0.188 1.188 12 H -0.177 1.177 13 O -0.085 6.085 14 C -0.232 4.232 15 C -0.095 4.095 16 H 0.086 0.914 17 H 0.092 0.908 18 H 0.079 0.921 19 H 0.133 0.867 20 H 0.103 0.897 21 H 0.074 0.926 22 H 0.100 0.900 23 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.878 -0.934 0.002 2.097 hybrid contribution 0.555 0.537 -0.005 0.772 sum -1.322 -0.397 -0.003 1.381 Atomic orbital electron populations 1.20094 0.88165 1.02217 1.01753 1.20129 0.97255 0.92145 1.05805 1.21444 0.92132 0.97884 1.32730 1.20160 0.95297 0.79686 0.93668 1.19121 0.89003 0.94735 1.48527 0.87392 1.27231 1.04830 0.96639 0.90875 1.69860 1.28811 1.11945 1.34199 0.84881 0.73993 0.78034 0.80531 1.17740 1.18810 1.17726 1.84327 1.27323 1.22777 1.74051 1.22665 0.81978 0.97807 1.20789 1.19923 1.00128 0.86664 1.02737 0.91418 0.90776 0.92084 0.86714 0.89661 0.92639 0.90010 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 10.16 71.24 0.72 -1.66 14 2 C -0.15 -7.59 6.13 -20.09 -0.12 -7.71 14 3 C -0.42 -23.70 10.89 22.96 0.25 -23.45 14 4 C 0.16 10.06 6.79 22.95 0.16 10.22 14 5 C -0.48 -28.08 9.32 23.10 0.22 -27.86 14 6 H 0.11 5.80 7.85 -2.91 -0.02 5.78 14 7 C 0.02 1.08 5.50 85.31 0.47 1.55 14 8 N -0.82 -46.28 12.01 21.87 0.26 -46.02 14 9 Si 1.01 38.90 29.56 68.60 2.03 40.93 14 10 H -0.25 -9.33 7.11 99.48 0.71 -8.63 14 11 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 12 H -0.25 -9.33 7.11 99.48 0.71 -8.62 14 13 O -0.19 -11.45 8.97 -9.79 -0.09 -11.54 14 14 C -0.18 -9.59 7.31 25.09 0.18 -9.41 14 15 C -0.04 -1.45 9.90 71.23 0.71 -0.75 14 16 H 0.07 2.22 8.14 -2.39 -0.02 2.20 14 17 H 0.07 2.30 7.87 -2.38 -0.02 2.28 14 18 H 0.06 2.07 8.14 -2.39 -0.02 2.05 14 19 H 0.11 6.07 8.06 -2.91 -0.02 6.05 14 20 H 0.29 14.68 8.30 -92.71 -0.77 13.91 14 21 H 0.05 2.11 8.14 -2.38 -0.02 2.09 14 22 H 0.08 2.66 8.14 -2.39 -0.02 2.64 14 23 H 0.08 2.65 8.14 -2.39 -0.02 2.63 14 Total: -1.00 -68.12 210.65 5.97 -62.15 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.19 Total: 13.56 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 2.58 Total: -59.08 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.26 Total: -46.02 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.09 Total: -11.54 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -68.12 5.97 -62.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300843119.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.976 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds