Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.47206 * 112.94016 * 2 1 4 4 N 2.60798 * 112.94090 * 0.02562 * 2 1 3 5 5 C 1.53940 * 113.74418 * 131.59051 * 2 1 3 6 6 N 1.47814 * 86.03865 * 90.88532 * 5 2 1 7 7 C 1.36932 * 134.45843 * 204.64612 * 6 5 2 8 8 H 1.08002 * 119.99600 * 179.86225 * 7 6 5 9 9 C 1.38807 * 120.00186 * 359.86511 * 7 6 5 10 10 N 1.31617 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00253 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47076 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47275 * 119.99752 * 11 9 7 14 14 H 1.48496 * 109.47323 * 240.00134 * 11 9 7 15 15 C 1.47588 * 91.04799 * 24.54996 * 6 5 2 16 16 H 1.08993 * 109.47741 * 69.66717 * 1 2 3 17 17 H 1.09002 * 109.46605 * 189.66981 * 1 2 3 18 18 H 1.08998 * 109.46961 * 309.66334 * 1 2 3 19 19 H 1.09000 * 113.77366 * 205.14567 * 5 2 1 20 20 H 1.09001 * 113.77240 * 336.54702 * 5 2 1 21 21 H 0.97007 * 119.99681 * 180.02562 * 10 9 7 22 22 H 1.08999 * 113.76895 * 221.15504 * 15 6 5 23 23 H 1.08990 * 113.76869 * 89.75335 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1038 1.3556 0.0000 4 7 2.5465 2.4017 0.0011 5 6 2.1498 -0.9354 1.0539 6 7 2.1296 -1.9700 -0.0016 7 6 2.1011 -3.3390 -0.0023 8 1 2.0888 -3.8784 -0.9379 9 6 2.0881 -4.0335 1.1995 10 7 2.1036 -3.3761 2.3397 11 14 2.0485 -5.9010 1.1987 12 1 2.0367 -6.3953 -0.2016 13 1 3.2512 -6.4220 1.8968 14 1 0.8268 -6.3706 1.9001 15 6 2.1499 -0.9353 -1.0540 16 1 -0.3634 0.3570 -0.9635 17 1 -0.3632 -1.0131 0.1726 18 1 -0.3633 0.6559 0.7911 19 1 3.1533 -0.6440 1.3641 20 1 1.4891 -1.1500 1.8938 21 1 2.0948 -3.8615 3.1795 22 1 1.4891 -1.1499 -1.8938 23 1 3.1532 -0.6439 -1.3641 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307725365.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = 76.926637 kcal Electronic energy + Delta-G solvation = -9121.144858 eV Core-core repulsion = 7357.403535 eV Total energy + Delta-G solvation = -1763.741322 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.83066 -35.49539 -32.48034 -29.75848 -26.50877 -25.03441 -23.34894 -20.08962 -16.95046 -16.05987 -14.92946 -14.08612 -13.74600 -13.45036 -13.01901 -12.48738 -12.18498 -11.73618 -11.27270 -11.18874 -11.00432 -10.81081 -10.63002 -9.97881 -9.79255 -9.54120 -8.88751 -7.00369 -5.84699 -3.18246 3.19378 3.26809 3.36358 3.41960 3.44480 4.29596 4.56953 5.04598 5.24118 5.40416 5.62336 5.94398 6.18955 6.31935 6.44635 6.50945 6.68224 7.06153 7.14680 7.43341 7.88395 8.04585 8.96060 9.62542 10.46797 11.32711 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.097006 B = 0.013352 C = 0.013097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.573016 B = 2096.555354 C = 2137.389172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.035 4.035 3 C 0.238 3.762 4 N -0.470 5.470 5 C 0.183 3.817 6 N -0.605 5.605 7 C -0.224 4.224 8 H 0.084 0.916 9 C -0.005 4.005 10 N -0.920 5.920 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.139 3.861 16 H 0.054 0.946 17 H 0.086 0.914 18 H 0.055 0.945 19 H 0.034 0.966 20 H 0.088 0.912 21 H 0.255 0.745 22 H 0.059 0.941 23 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 2.417 -3.623 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.041 4.041 3 C -0.080 4.080 4 N -0.146 5.146 5 C 0.056 3.944 6 N -0.331 5.331 7 C -0.352 4.352 8 H 0.102 0.898 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.744 3.256 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.216 1.216 15 C 0.011 3.989 16 H 0.073 0.927 17 H 0.105 0.895 18 H 0.074 0.926 19 H 0.052 0.948 20 H 0.106 0.894 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.454 3.668 -3.479 5.620 hybrid contribution 0.071 -1.352 0.111 1.358 sum -2.384 2.316 -3.368 4.732 Atomic orbital electron populations 1.21411 0.90337 1.03949 1.01125 1.20953 0.97087 0.81770 1.04242 1.29485 0.92416 0.94247 0.91806 1.81080 1.10554 1.12715 1.10202 1.22405 0.97436 0.82342 0.92198 1.45873 1.85995 1.00534 1.00726 1.19050 1.44178 0.78856 0.93071 0.89785 1.24792 1.02100 0.98175 0.95125 1.69798 1.56302 1.34006 0.96610 0.86026 0.77296 0.84828 0.77460 1.20382 1.21743 1.21612 1.22609 0.97274 0.86566 0.92427 0.92697 0.89483 0.92597 0.94843 0.89389 0.93468 0.92303 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.08 37.16 0.34 -1.37 14 2 C -0.04 -0.64 1.32 -156.37 -0.21 -0.84 14 3 C 0.24 4.33 14.53 -20.76 -0.30 4.03 14 4 N -0.47 -9.15 18.54 42.15 0.78 -8.37 14 5 C 0.18 4.07 6.60 -2.84 -0.02 4.05 14 6 N -0.61 -14.52 3.56 -177.48 -0.63 -15.15 14 7 C -0.22 -5.93 10.70 -15.06 -0.16 -6.09 14 8 H 0.08 2.14 7.83 -52.49 -0.41 1.72 14 9 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 14 10 N -0.92 -26.06 11.39 55.49 0.63 -25.42 14 11 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 14 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 14 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 14 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 14 15 C 0.14 2.65 8.05 -2.96 -0.02 2.63 14 16 H 0.05 0.73 8.14 -51.93 -0.42 0.30 14 17 H 0.09 1.50 8.00 -51.93 -0.42 1.08 14 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14 19 H 0.03 0.78 8.08 -51.93 -0.42 0.36 14 20 H 0.09 2.11 7.12 -51.93 -0.37 1.74 14 21 H 0.26 7.01 8.31 -40.82 -0.34 6.67 14 22 H 0.06 1.02 8.10 -51.93 -0.42 0.60 14 23 H 0.04 0.74 8.08 -51.93 -0.42 0.32 14 LS Contribution 211.95 15.07 3.19 3.19 Total: -1.00 -28.90 211.95 -3.96 -32.86 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: -2.44 Total: -5.51 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.47 Total: 2.18 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.78 Total: -48.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.90 -3.96 -32.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307725365.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.786 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds