Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48498 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47352 * 300.00059 * 3 2 1 6 6 H 1.48501 * 109.47159 * 59.99811 * 3 2 1 7 7 C 1.37873 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00046 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.52302 * 115.91850 * 111.82251 * 9 7 2 11 11 C 1.52069 * 115.31637 * 179.91255 * 9 7 2 12 12 H 1.09007 * 117.24922 * 0.35415 * 11 9 7 13 13 C 1.52709 * 120.52753 * 148.97840 * 11 9 7 14 14 C 1.52770 * 110.28066 * 338.64675 * 13 11 9 15 15 C 1.53301 * 108.63811 * 54.24578 * 14 13 11 16 16 C 1.52074 * 114.63588 * 325.57253 * 9 7 2 17 17 H 0.97002 * 120.00069 * 0.02562 * 1 2 3 18 18 H 1.09003 * 117.53656 * 213.16191 * 10 9 7 19 19 H 1.09000 * 117.53949 * 358.33989 * 10 9 7 20 20 H 1.09005 * 109.35389 * 98.73945 * 13 11 9 21 21 H 1.09000 * 109.36083 * 218.45687 * 13 11 9 22 22 H 1.08998 * 109.44783 * 294.58151 * 14 13 11 23 23 H 1.09000 * 109.72940 * 174.07452 * 14 13 11 24 24 H 1.09002 * 109.61781 * 165.99754 * 15 14 13 25 25 H 1.08998 * 109.61503 * 45.63894 * 15 14 13 26 26 H 1.09001 * 109.26583 * 74.10852 * 16 9 7 27 27 H 1.08999 * 109.27177 * 314.64593 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 1.3597 -3.3305 -1.2709 11 6 2.1164 -3.7496 -0.0009 12 1 3.1973 -3.6085 0.0041 13 6 1.6315 -5.0293 0.6767 14 6 0.5533 -4.7057 1.7095 15 6 -0.5566 -3.9010 1.0234 16 6 -0.0537 -2.4779 0.7815 17 1 -0.4850 0.8401 -0.0004 18 1 0.4928 -3.9247 -1.5601 19 1 1.9437 -2.9187 -2.0940 20 1 1.2177 -5.7016 -0.0749 21 1 2.4711 -5.5156 1.1734 22 1 0.9885 -4.1152 2.5157 23 1 0.1397 -5.6305 2.1117 24 1 -1.4382 -3.8738 1.6638 25 1 -0.8105 -4.3662 0.0709 26 1 -0.8023 -1.9230 0.2160 27 1 0.1091 -1.9861 1.7406 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669379550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = -11.148414 kcal Electronic energy + Delta-G solvation = -9693.077710 eV Core-core repulsion = 8029.057510 eV Total energy + Delta-G solvation = -1664.020200 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.13166 -34.88231 -33.50867 -31.06203 -27.40459 -25.14046 -22.69178 -21.74925 -19.27412 -18.31896 -16.69430 -15.86428 -14.90178 -14.61760 -14.52346 -14.05683 -13.69558 -13.06262 -12.81138 -12.58588 -12.45240 -11.98814 -11.71239 -11.46797 -11.37206 -10.93302 -10.56646 -10.16545 -9.86373 -8.00884 -6.20607 1.38425 1.40353 1.51858 2.40480 3.02783 3.55231 4.13247 4.22381 4.26874 4.58240 4.64137 4.76236 4.85830 4.95674 5.01737 5.06039 5.15407 5.34139 5.38520 5.51041 5.61156 5.68533 5.77648 5.89611 6.26835 6.42957 6.86438 7.43020 8.93013 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.073499 B = 0.016735 C = 0.015310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.868261 B = 1672.713006 C = 1828.480324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.046 0.954 9 C 0.029 3.971 10 C -0.206 4.206 11 C -0.170 4.170 12 H 0.071 0.929 13 C -0.077 4.077 14 C -0.111 4.111 15 C -0.123 4.123 16 C -0.047 4.047 17 H 0.260 0.740 18 H 0.079 0.921 19 H 0.059 0.941 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -6.233 1.848 6.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.064 0.936 9 C 0.029 3.971 10 C -0.244 4.244 11 C -0.189 4.189 12 H 0.090 0.910 13 C -0.115 4.115 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.085 4.085 17 H 0.069 0.931 18 H 0.097 0.903 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.175 -6.101 1.847 6.377 hybrid contribution 0.533 1.189 -0.280 1.333 sum 0.708 -4.912 1.567 5.204 Atomic orbital electron populations 1.70170 1.06866 1.26693 1.50531 1.25745 0.95842 1.02194 0.94211 0.85534 0.78849 0.79614 0.77817 1.19592 1.20401 1.20234 1.21130 0.92271 0.91369 1.50891 0.93600 1.18779 0.94479 0.88927 0.94965 1.23079 1.02003 1.07191 0.92143 1.22346 0.96578 0.98156 1.01792 0.91020 1.20966 0.98392 0.94409 0.97688 1.21499 0.96023 0.99698 0.97612 1.21742 0.98012 0.96316 0.99951 1.20538 0.96245 0.94076 0.97671 0.93059 0.90285 0.92247 0.91625 0.91047 0.93348 0.90042 0.91923 0.92694 0.91789 0.96094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.15 10.45 21.45 0.22 -51.93 15 2 C 0.02 1.11 5.36 84.65 0.45 1.57 15 3 Si 0.96 44.27 29.54 68.60 2.03 46.30 15 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 7 C -0.52 -29.78 8.85 25.60 0.23 -29.55 15 8 H 0.05 2.64 7.81 -2.91 -0.02 2.62 15 9 C 0.03 1.48 2.33 -53.77 -0.13 1.36 15 10 C -0.21 -9.65 9.29 30.58 0.28 -9.36 15 11 C -0.17 -7.47 5.79 -10.98 -0.06 -7.53 15 12 H 0.07 3.21 8.13 -2.38 -0.02 3.19 15 13 C -0.08 -2.66 5.83 30.42 0.18 -2.48 15 14 C -0.11 -3.74 5.93 30.62 0.18 -3.56 15 15 C -0.12 -4.70 5.69 30.65 0.17 -4.52 15 16 C -0.05 -2.35 4.10 30.25 0.12 -2.22 15 17 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 18 H 0.08 3.41 7.27 -2.39 -0.02 3.40 15 19 H 0.06 2.86 8.14 -2.39 -0.02 2.84 15 20 H 0.07 2.07 8.06 -2.38 -0.02 2.05 15 21 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.05 1.74 8.05 -2.39 -0.02 1.72 15 23 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.05 2.03 7.12 -2.39 -0.02 2.02 15 26 H 0.06 3.50 6.39 -2.39 -0.02 3.48 15 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 Total: -1.00 -59.77 216.31 4.81 -54.96 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.12 Total: 6.97 kcal Atomic # 6 Polarization: -57.73 SS G_CDS: 1.43 Total: -56.30 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.22 Total: -51.93 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.77 4.81 -54.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669379550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.815 kcal (2) G-P(sol) polarization free energy of solvation -59.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds