Wall clock time and date at job start Mon Mar 30 2020 02:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 C 1.50695 * 109.47240 * 304.68834 * 6 5 4 8 8 H 1.08004 * 120.00178 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99993 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99872 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47383 * 89.99595 * 11 9 7 13 13 H 1.48499 * 109.47053 * 209.99710 * 11 9 7 14 14 H 1.48505 * 109.47238 * 329.99751 * 11 9 7 15 15 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 16 16 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 17 17 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 18 18 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 19 19 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 20 20 H 1.09004 * 109.47000 * 64.68980 * 6 5 4 21 21 H 1.08998 * 109.47166 * 184.68757 * 6 5 4 22 22 H 0.96995 * 119.99599 * 179.97438 * 10 9 7 23 23 H 1.07999 * 126.58816 * 179.97438 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 6 5.6657 -1.1187 -1.1608 8 1 5.3537 -0.3363 -1.8368 9 6 6.8660 -1.7664 -1.3629 10 7 7.6308 -1.4317 -2.3792 11 14 7.4052 -3.1201 -0.1942 12 1 6.9011 -4.4278 -0.6851 13 1 8.8883 -3.1547 -0.1274 14 1 6.8548 -2.8540 1.1592 15 6 2.2772 -1.1018 -0.0021 16 1 -0.3633 0.0000 1.0277 17 1 -0.3633 0.8901 -0.5137 18 1 -0.3634 -0.8899 -0.5139 19 1 1.9335 2.1145 -0.0004 20 1 5.3330 -1.3463 0.9348 21 1 4.5100 -2.5527 -0.0828 22 1 8.4754 -1.8871 -2.5211 23 1 1.9612 -2.1345 -0.0033 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535788467.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:03 Heat of formation + Delta-G solvation = 34.916465 kcal Electronic energy + Delta-G solvation = -8913.223370 eV Core-core repulsion = 7147.660350 eV Total energy + Delta-G solvation = -1765.563020 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.74715 -35.68052 -34.48391 -32.22778 -29.43899 -27.34061 -24.54042 -21.91886 -20.80936 -18.85161 -17.74181 -16.42656 -16.15190 -15.24202 -14.90020 -14.62984 -14.07496 -13.58505 -13.39530 -13.29247 -12.46448 -12.25581 -11.87353 -11.53578 -10.75537 -10.58234 -10.27439 -9.07964 -8.23213 -6.26340 1.28801 1.38431 1.42972 1.55456 2.15069 2.40981 2.41559 3.10753 3.94961 4.08204 4.20752 4.54066 4.66936 4.76701 4.80177 5.07277 5.37329 5.46708 5.64175 5.95807 6.39677 6.54781 6.78868 7.34920 7.44938 8.94878 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.095173 B = 0.012286 C = 0.011542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 294.129650 B = 2278.408559 C = 2425.441492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.465 5.465 3 C 0.169 3.831 4 N -0.544 5.544 5 C -0.003 4.003 6 C 0.063 3.937 7 C -0.510 4.510 8 H 0.017 0.983 9 C -0.003 4.003 10 N -0.958 5.958 11 Si 0.961 3.039 12 H -0.257 1.257 13 H -0.283 1.283 14 H -0.248 1.248 15 C -0.068 4.068 16 H 0.091 0.909 17 H 0.106 0.894 18 H 0.095 0.905 19 H 0.239 0.761 20 H 0.021 0.979 21 H 0.044 0.956 22 H 0.266 0.734 23 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 -0.613 7.116 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.149 5.149 3 C -0.113 4.113 4 N -0.264 5.264 5 C -0.131 4.131 6 C 0.025 3.975 7 C -0.548 4.548 8 H 0.035 0.965 9 C -0.199 4.199 10 N -0.599 5.599 11 Si 0.783 3.217 12 H -0.182 1.182 13 H -0.209 1.209 14 H -0.172 1.172 15 C -0.200 4.200 16 H 0.110 0.890 17 H 0.125 0.875 18 H 0.114 0.886 19 H 0.255 0.745 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.339 -0.145 7.036 16.876 hybrid contribution 0.067 -0.691 -0.092 0.700 sum -15.272 -0.836 6.944 16.797 Atomic orbital electron populations 1.22338 0.73644 1.06151 1.04869 1.45601 1.09123 1.05741 1.54473 1.25655 0.84909 0.95244 1.05514 1.70073 1.21923 1.13326 1.21062 1.21016 0.95273 0.90731 1.06118 1.17907 0.90056 0.94005 0.95501 1.21188 1.04013 1.18860 1.10747 0.96454 1.26117 0.96095 1.00271 0.97373 1.70096 1.13251 1.44542 1.32010 0.85508 0.77297 0.78876 0.80006 1.18177 1.20905 1.17178 1.22702 0.90006 0.93959 1.13376 0.89041 0.87502 0.88641 0.74532 0.96124 0.93816 0.92536 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 11.18 127.77 1.43 2.44 14 2 N -0.47 -13.33 3.15 -552.52 -1.74 -15.07 14 3 C 0.17 5.72 12.56 180.26 2.26 7.98 14 4 N -0.54 -25.97 11.23 -188.31 -2.11 -28.08 14 5 C 0.00 -0.15 6.29 41.39 0.26 0.11 14 6 C 0.06 3.35 4.61 29.10 0.13 3.49 14 7 C -0.51 -32.63 9.63 25.60 0.25 -32.39 14 8 H 0.02 1.25 7.98 -2.91 -0.02 1.23 14 9 C 0.00 -0.21 5.47 84.66 0.46 0.26 14 10 N -0.96 -63.92 13.96 21.45 0.30 -63.62 14 11 Si 0.96 46.38 27.47 68.60 1.88 48.27 14 12 H -0.26 -11.52 7.11 99.48 0.71 -10.81 14 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 14 14 H -0.25 -11.22 6.54 99.48 0.65 -10.57 14 15 C -0.07 -2.44 11.46 83.09 0.95 -1.49 14 16 H 0.09 0.97 8.14 -2.38 -0.02 0.95 14 17 H 0.11 1.03 8.14 -2.39 -0.02 1.01 14 18 H 0.09 1.12 8.14 -2.39 -0.02 1.10 14 19 H 0.24 5.45 8.06 -2.91 -0.02 5.42 14 20 H 0.02 1.10 7.20 -2.38 -0.02 1.09 14 21 H 0.04 2.08 7.54 -2.39 -0.02 2.06 14 22 H 0.27 16.37 8.31 -92.71 -0.77 15.60 14 23 H 0.20 5.57 8.06 -2.91 -0.02 5.55 14 Total: -1.00 -83.32 209.34 5.21 -78.11 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.13 Total: -0.01 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 5.75 Total: -19.61 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.56 Total: -106.77 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -83.32 5.21 -78.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535788467.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.031 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds