Wall clock time and date at job start Mon Mar 30 2020 02:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.35446 * 126.77970 * 2 1 4 4 C 1.41381 * 103.98610 * 180.09697 * 3 2 1 5 5 C 1.50700 * 126.80196 * 179.88302 * 4 3 2 6 6 C 1.50702 * 109.46869 * 124.71031 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99985 * 180.27663 * 8 6 5 10 10 Si 1.86800 * 119.99777 * 0.28166 * 8 6 5 11 11 H 1.48498 * 109.47109 * 89.99834 * 10 8 6 12 12 H 1.48507 * 109.46754 * 209.99574 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99405 * 10 8 6 14 14 N 1.30172 * 106.39552 * 359.62744 * 4 3 2 15 15 O 1.20922 * 111.60487 * 0.23805 * 14 4 3 16 16 H 1.09003 * 109.47671 * 180.30433 * 1 2 3 17 17 H 1.09001 * 109.47188 * 300.30162 * 1 2 3 18 18 H 1.09005 * 109.47476 * 60.30335 * 1 2 3 19 19 H 1.07997 * 128.00751 * 359.95650 * 3 2 1 20 20 H 1.09004 * 109.47210 * 4.71325 * 5 4 3 21 21 H 1.08994 * 109.47551 * 244.70977 * 5 4 3 22 22 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0848 0.0000 4 6 3.6213 0.5371 -0.0023 5 6 4.9210 1.2998 -0.0058 6 6 5.7662 0.8572 1.1608 7 1 5.3991 0.0992 1.8368 8 6 7.0108 1.4156 1.3615 9 7 7.7507 1.0255 2.3764 10 14 7.6460 2.7263 0.1919 11 1 7.2393 4.0673 0.6833 12 1 9.1277 2.6526 0.1235 13 1 7.0763 2.5009 -1.1608 14 7 3.4762 -0.7565 0.0047 15 8 2.3094 -1.0737 0.0061 16 1 -0.3634 -1.0276 0.0055 17 1 -0.3633 0.5185 0.8873 18 1 -0.3634 0.5091 -0.8927 19 1 2.0345 2.1270 -0.0006 20 1 4.7162 2.3671 0.0782 21 1 5.4546 1.1043 -0.9358 22 1 8.6261 1.4186 2.5178 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535852134.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:27 Heat of formation + Delta-G solvation = 25.025896 kcal Electronic energy + Delta-G solvation = -9036.360416 eV Core-core repulsion = 7172.649847 eV Total energy + Delta-G solvation = -1863.710569 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.76366 -36.26756 -34.62565 -34.03135 -30.86098 -28.50266 -25.37990 -23.81020 -20.67669 -19.15578 -18.40057 -17.96546 -16.45423 -15.40468 -14.77993 -14.64661 -14.08490 -13.89381 -13.83619 -13.17001 -12.71745 -12.54860 -12.07205 -11.81624 -11.64203 -10.86566 -10.66775 -10.10637 -8.35581 -6.43351 0.72182 1.34288 1.38439 1.47643 1.50583 2.32169 2.48316 2.97785 3.58694 3.77499 4.28840 4.50290 4.63553 4.82118 4.87088 4.94698 5.11168 5.24421 5.35920 5.49005 6.16337 6.60561 7.19309 7.62573 8.81929 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.096678 B = 0.012237 C = 0.011503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.552073 B = 2287.605157 C = 2433.463204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.040 4.040 3 C -0.247 4.247 4 C 0.023 3.977 5 C 0.058 3.942 6 C -0.532 4.532 7 H 0.017 0.983 8 C 0.005 3.995 9 N -0.949 5.949 10 Si 0.962 3.038 11 H -0.254 1.254 12 H -0.281 1.281 13 H -0.245 1.245 14 N -0.410 5.410 15 O 0.083 5.917 16 H 0.093 0.907 17 H 0.105 0.895 18 H 0.112 0.888 19 H 0.196 0.804 20 H 0.060 0.940 21 H 0.037 0.963 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.073 3.363 -7.204 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C -0.268 4.268 4 C -0.134 4.134 5 C 0.020 3.980 6 C -0.570 4.570 7 H 0.036 0.964 8 C -0.192 4.192 9 N -0.589 5.589 10 Si 0.784 3.216 11 H -0.178 1.178 12 H -0.206 1.206 13 H -0.168 1.168 14 N -0.117 5.117 15 O 0.018 5.982 16 H 0.112 0.888 17 H 0.124 0.876 18 H 0.131 0.869 19 H 0.213 0.787 20 H 0.078 0.922 21 H 0.055 0.945 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.070 2.342 -7.109 15.062 hybrid contribution 0.591 0.871 0.138 1.062 sum -12.479 3.214 -6.971 14.651 Atomic orbital electron populations 1.20546 0.79955 1.05842 1.05747 1.25456 0.98302 0.85324 1.01372 1.22776 0.90013 1.02603 1.11407 1.24055 0.98916 0.89982 1.00463 1.18078 0.87862 0.95482 0.96594 1.21102 1.02095 1.22753 1.11046 0.96412 1.26115 0.96253 0.99534 0.97323 1.70072 1.12097 1.45053 1.31700 0.85493 0.77522 0.78810 0.79823 1.17845 1.20620 1.16846 1.73813 0.97312 1.18195 1.22356 1.84759 1.11221 1.34439 1.67771 0.88839 0.87623 0.86921 0.78654 0.92221 0.94499 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.45 71.23 0.74 -0.25 14 2 C -0.04 -1.22 7.49 25.04 0.19 -1.03 14 3 C -0.25 -8.52 11.05 22.40 0.25 -8.27 14 4 C 0.02 1.09 6.53 43.58 0.28 1.37 14 5 C 0.06 2.91 4.64 29.10 0.13 3.05 14 6 C -0.53 -32.96 9.63 25.60 0.25 -32.71 14 7 H 0.02 1.25 7.98 -2.91 -0.02 1.22 14 8 C 0.00 0.29 5.47 84.66 0.46 0.75 14 9 N -0.95 -61.57 13.96 21.45 0.30 -61.27 14 10 Si 0.96 44.31 27.47 68.60 1.88 46.19 14 11 H -0.25 -10.84 7.11 99.48 0.71 -10.14 14 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 14 13 H -0.25 -10.43 6.54 99.48 0.65 -9.78 14 14 N -0.41 -19.88 12.05 -49.56 -0.60 -20.48 14 15 O 0.08 3.26 11.20 71.61 0.80 4.06 14 16 H 0.09 1.20 8.14 -2.39 -0.02 1.19 14 17 H 0.11 1.29 8.14 -2.39 -0.02 1.27 14 18 H 0.11 1.20 8.14 -2.38 -0.02 1.18 14 19 H 0.20 5.18 8.06 -2.91 -0.02 5.16 14 20 H 0.06 2.69 7.57 -2.38 -0.02 2.67 14 21 H 0.04 1.85 7.19 -2.39 -0.02 1.83 14 22 H 0.27 16.10 8.31 -92.71 -0.77 15.33 14 Total: -1.00 -76.45 204.22 5.85 -70.60 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 1.15 Total: -2.02 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.31 Total: -37.08 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -0.30 Total: -81.75 kcal Atomic # 8 Polarization: 3.26 SS G_CDS: 0.80 Total: 4.06 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -76.45 5.85 -70.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535852134.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.625 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds