Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 O 1.42895 * 112.94078 * 334.99876 * 3 2 1 5 5 C 1.53942 * 113.83437 * 106.68116 * 3 2 1 6 6 N 1.47577 * 86.11363 * 90.75293 * 5 3 2 7 7 C 1.36945 * 134.48681 * 204.63649 * 6 5 3 8 8 H 1.08004 * 119.99586 * 173.48254 * 7 6 5 9 9 C 1.38808 * 120.00348 * 353.48334 * 7 6 5 10 10 N 1.31624 * 119.99905 * 5.05914 * 9 7 6 11 11 Si 1.86799 * 119.99834 * 185.06871 * 9 7 6 12 12 H 1.48501 * 109.47239 * 94.98896 * 11 9 7 13 13 H 1.48507 * 109.46776 * 214.98218 * 11 9 7 14 14 H 1.48496 * 109.47369 * 334.98276 * 11 9 7 15 15 C 1.47575 * 91.01989 * 24.63859 * 6 5 3 16 16 H 4.45195 * 5.14182 * 179.97438 * 4 1 2 17 17 H 0.96699 * 114.00880 * 48.40741 * 4 3 2 18 18 H 1.09004 * 113.76419 * 205.04885 * 5 3 2 19 19 H 1.09004 * 113.77548 * 336.44849 * 5 3 2 20 20 H 0.97004 * 119.99669 * 179.97438 * 10 9 7 21 21 H 1.09004 * 113.76813 * 221.06191 * 15 6 5 22 22 H 1.08997 * 113.87240 * 89.67426 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2036 -1.1917 0.5562 5 6 3.2679 0.4051 -1.3489 6 7 3.2446 1.7869 -0.8311 7 6 3.2155 3.0280 -1.4093 8 1 3.0967 3.9076 -0.7941 9 6 3.3387 3.1554 -2.7860 10 7 3.3834 2.0809 -3.5450 11 14 3.4415 4.8517 -3.5615 12 1 4.8665 5.2218 -3.7556 13 1 2.7504 4.8377 -4.8759 14 1 2.7893 5.8440 -2.6698 15 6 3.2652 1.2942 0.5598 16 1 -1.0498 -0.0002 0.0003 17 1 2.8173 -2.0066 0.2072 18 1 4.2723 0.0115 -1.5052 19 1 2.6091 0.2445 -2.2023 20 1 3.4691 2.1700 -4.5072 21 1 2.6041 1.8433 1.2303 22 1 4.2680 1.1613 0.9658 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560203580.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = 41.573462 kcal Electronic energy + Delta-G solvation = -9244.093578 eV Core-core repulsion = 7381.100565 eV Total energy + Delta-G solvation = -1862.993013 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.44679 -36.49265 -34.18764 -33.30247 -29.44278 -26.81386 -25.35578 -22.26823 -19.76062 -18.80047 -17.48962 -16.87873 -15.99729 -15.76394 -14.83660 -14.25991 -13.78105 -13.39181 -13.05382 -12.83792 -12.49473 -12.02413 -11.69307 -11.68363 -11.47185 -10.94034 -10.61382 -9.03081 -7.97264 -5.32380 1.44838 1.47779 1.56737 1.76727 1.78177 2.43038 3.15763 3.19580 3.33588 3.54430 3.93800 4.63466 4.69804 4.77025 4.94500 5.10703 5.33221 5.40362 5.81994 6.65009 6.77557 6.83868 7.52101 8.45440 9.20750 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.072785 B = 0.014714 C = 0.014169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.600822 B = 1902.450515 C = 1975.672101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.227 4.227 3 C 0.197 3.803 4 O -0.548 6.548 5 C 0.152 3.848 6 N -0.632 5.632 7 C -0.240 4.240 8 H 0.089 0.911 9 C -0.064 4.064 10 N -0.953 5.953 11 Si 0.986 3.014 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.265 1.265 15 C 0.138 3.862 16 H 0.260 0.740 17 H 0.393 0.607 18 H 0.034 0.966 19 H 0.044 0.956 20 H 0.251 0.749 21 H 0.063 0.937 22 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.998 -3.760 5.623 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.228 4.228 3 C 0.155 3.845 4 O -0.355 6.355 5 C 0.026 3.974 6 N -0.360 5.360 7 C -0.368 4.368 8 H 0.107 0.893 9 C -0.258 4.258 10 N -0.601 5.601 11 Si 0.813 3.187 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.189 1.189 15 C 0.013 3.987 16 H 0.276 0.724 17 H 0.243 0.757 18 H 0.051 0.949 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.631 -3.122 5.726 7.464 hybrid contribution -0.138 0.310 -1.032 1.086 sum -3.769 -2.813 4.694 6.644 Atomic orbital electron populations 1.25765 0.96474 0.97115 0.98553 1.23092 0.94411 1.03064 1.02211 1.19814 0.83491 0.85926 0.95254 1.86511 1.64439 1.15843 1.68679 1.22743 0.96841 0.83812 0.93971 1.45856 1.86368 1.01773 1.02017 1.19410 1.42945 0.83505 0.90917 0.89339 1.25751 1.02072 1.01487 0.96455 1.70028 1.57024 1.28989 1.04046 0.84963 0.77567 0.78680 0.77513 1.21202 1.21843 1.18907 1.22720 0.98568 0.89221 0.88231 0.72393 0.75666 0.94875 0.93784 0.93969 0.91889 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 19.25 74.32 1.43 -3.74 14 2 C -0.23 -8.86 12.58 31.13 0.39 -8.46 14 3 C 0.20 8.20 1.88 -11.94 -0.02 8.18 14 4 O -0.55 -19.17 13.49 -148.98 -2.01 -21.18 14 5 C 0.15 7.73 6.81 86.48 0.59 8.32 14 6 N -0.63 -34.28 3.60 -720.93 -2.60 -36.88 14 7 C -0.24 -13.90 10.70 84.03 0.90 -13.00 14 8 H 0.09 4.86 7.83 -2.91 -0.02 4.83 14 9 C -0.06 -3.74 5.50 84.86 0.47 -3.27 14 10 N -0.95 -58.56 11.51 21.65 0.25 -58.31 14 11 Si 0.99 46.09 29.56 68.60 2.03 48.12 14 12 H -0.29 -13.12 7.11 99.48 0.71 -12.42 14 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 14 14 H -0.26 -11.61 7.11 99.48 0.71 -10.90 14 15 C 0.14 6.11 8.32 86.48 0.72 6.83 14 16 H 0.26 5.34 7.80 -4.43 -0.03 5.30 14 17 H 0.39 10.10 9.02 -74.06 -0.67 9.43 14 18 H 0.03 1.73 8.14 -2.38 -0.02 1.71 14 19 H 0.04 2.46 7.30 -2.39 -0.02 2.44 14 20 H 0.25 14.87 8.31 -92.71 -0.77 14.10 14 21 H 0.06 2.62 8.08 -2.39 -0.02 2.60 14 22 H 0.06 2.62 8.14 -2.39 -0.02 2.60 14 Total: -1.00 -69.30 209.13 2.69 -66.61 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.55 Total: 6.79 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.47 Total: -5.14 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -2.35 Total: -95.19 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -2.01 Total: -21.18 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -69.30 2.69 -66.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560203580.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.179 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds