Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47094 * 90.00103 * 3 2 1 5 5 H 1.48496 * 109.47232 * 210.00275 * 3 2 1 6 6 H 1.48500 * 109.47091 * 330.00336 * 3 2 1 7 7 C 1.38808 * 119.99816 * 179.72552 * 2 1 3 8 8 H 1.08003 * 120.00366 * 21.10765 * 7 2 1 9 9 N 1.36940 * 119.99875 * 201.10385 * 7 2 1 10 10 C 1.50232 * 130.84090 * 9.94593 * 9 7 2 11 11 C 1.56859 * 100.58790 * 234.63160 * 10 9 7 12 12 C 1.54847 * 103.35755 * 326.65672 * 11 10 9 13 13 C 1.50236 * 130.83785 * 190.28790 * 9 7 2 14 14 C 1.55840 * 101.05048 * 233.93034 * 13 9 7 15 15 C 1.55477 * 103.32707 * 326.97397 * 14 13 9 16 16 H 0.97003 * 120.00207 * 174.92905 * 1 2 3 17 17 H 1.09004 * 115.85457 * 359.68393 * 10 9 7 18 18 H 1.08997 * 110.43140 * 208.30552 * 11 10 9 19 19 H 1.09005 * 111.04064 * 85.29267 * 11 10 9 20 20 H 1.09000 * 110.62396 * 241.79048 * 12 11 10 21 21 H 1.09000 * 110.76618 * 118.82790 * 12 11 10 22 22 H 1.09008 * 115.86061 * 359.60586 * 13 9 7 23 23 H 1.09008 * 110.62805 * 85.55052 * 14 13 9 24 24 H 1.09003 * 110.62932 * 208.57086 * 14 13 9 25 25 H 1.08997 * 110.61102 * 241.58509 * 15 14 13 26 26 H 1.09004 * 110.89543 * 118.54948 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 0.0058 8 1 1.5245 -2.1077 -0.3267 9 7 3.3107 -1.2399 0.4330 10 6 4.1500 -0.1997 1.1190 11 6 5.3803 -0.1357 0.1480 12 6 5.5068 -1.5911 -0.3656 13 6 4.3395 -2.3319 0.3538 14 6 4.7685 -2.4468 1.8476 15 6 4.6390 -0.9886 2.3709 16 1 -0.4850 -0.8368 -0.0743 17 1 3.6596 0.7540 1.3140 18 1 6.2783 0.1595 0.6906 19 1 5.1907 0.5483 -0.6793 20 1 6.4676 -2.0177 -0.0775 21 1 5.3786 -1.6317 -1.4472 22 1 4.0123 -3.2603 -0.1144 23 1 4.0972 -3.1129 2.3898 24 1 5.7994 -2.7923 1.9255 25 1 5.6059 -0.6142 2.7071 26 1 3.9046 -0.9276 3.1742 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023915869.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = 42.867265 kcal Electronic energy + Delta-G solvation = -10017.900791 eV Core-core repulsion = 8290.796976 eV Total energy + Delta-G solvation = -1727.103815 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.06044 -32.64519 -29.71423 -29.33768 -28.63233 -23.53648 -21.50303 -19.93986 -18.67105 -17.24525 -15.85967 -14.49389 -14.14821 -13.32289 -13.10368 -11.91242 -11.71254 -11.45220 -11.22296 -11.06468 -10.76147 -10.52882 -10.12511 -9.72257 -9.41712 -9.20736 -9.08505 -8.56753 -7.12910 -6.24031 -3.09909 3.40537 3.54286 3.71041 4.64715 4.79429 5.32635 5.48455 5.57030 5.74966 5.82201 5.92304 6.01703 6.06281 6.18982 6.32636 6.40892 6.47068 6.55864 6.67510 6.87093 7.01025 7.07892 7.53584 8.33950 9.06795 9.61794 10.43705 11.25327 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.058593 B = 0.023146 C = 0.020583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.761687 B = 1209.430977 C = 1360.026181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.027 4.027 3 Si 1.061 2.939 4 H -0.296 1.296 5 H -0.276 1.276 6 H -0.302 1.302 7 C -0.307 4.307 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.116 3.884 11 C -0.138 4.138 12 C -0.130 4.130 13 C 0.133 3.867 14 C -0.127 4.127 15 C -0.127 4.127 16 H 0.260 0.740 17 H 0.091 0.909 18 H 0.054 0.946 19 H 0.064 0.936 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.163 -1.520 2.021 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.226 4.226 3 Si 0.896 3.104 4 H -0.225 1.225 5 H -0.202 1.202 6 H -0.230 1.230 7 C -0.434 4.434 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.010 3.990 11 C -0.177 4.177 12 C -0.170 4.170 13 C 0.026 3.974 14 C -0.167 4.167 15 C -0.167 4.167 16 H 0.070 0.930 17 H 0.108 0.892 18 H 0.072 0.928 19 H 0.082 0.918 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.104 0.896 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.743 0.105 1.987 10.926 hybrid contribution 0.184 -1.667 -0.074 1.679 sum 10.927 -1.562 1.913 11.202 Atomic orbital electron populations 1.70916 1.05608 1.29615 1.51162 1.25773 0.96437 1.00801 0.99616 0.83877 0.74859 0.75908 0.75798 1.22546 1.20214 1.23023 1.20094 0.84685 0.96145 1.42475 0.90594 1.46892 1.08612 1.10861 1.66862 1.23374 0.90507 0.93412 0.91755 1.23315 0.97836 0.96976 0.99591 1.22930 0.97922 0.96342 0.99782 1.22919 0.88529 0.92566 0.93413 1.23000 0.99025 0.96484 0.98158 1.22953 0.99296 0.96174 0.98228 0.92952 0.89197 0.92766 0.91770 0.92868 0.92596 0.89615 0.92561 0.92773 0.92720 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.98 13.70 55.49 0.76 -29.22 15 2 C -0.03 -0.82 5.50 -17.43 -0.10 -0.92 15 3 Si 1.06 27.20 25.00 -169.99 -4.25 22.95 15 4 H -0.30 -7.25 6.60 56.52 0.37 -6.87 15 5 H -0.28 -6.52 4.90 56.52 0.28 -6.25 15 6 H -0.30 -7.86 7.11 56.52 0.40 -7.45 15 7 C -0.31 -9.04 10.81 -15.06 -0.16 -9.20 15 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 15 9 N -0.61 -15.37 2.82 -145.21 -0.41 -15.78 15 10 C 0.12 2.58 3.63 -62.24 -0.23 2.35 15 11 C -0.14 -2.65 6.26 -23.67 -0.15 -2.80 15 12 C -0.13 -2.37 6.46 -24.24 -0.16 -2.53 15 13 C 0.13 2.73 5.43 -62.80 -0.34 2.39 15 14 C -0.13 -2.29 6.49 -23.90 -0.16 -2.45 15 15 C -0.13 -2.41 6.49 -23.90 -0.16 -2.56 15 16 H 0.26 8.29 8.73 -40.82 -0.36 7.93 15 17 H 0.09 2.12 3.39 -51.93 -0.18 1.94 15 18 H 0.05 0.88 7.88 -51.93 -0.41 0.47 15 19 H 0.06 1.29 6.50 -51.93 -0.34 0.95 15 20 H 0.05 0.81 7.85 -51.93 -0.41 0.41 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.09 1.71 8.14 -51.92 -0.42 1.28 15 23 H 0.06 1.02 8.14 -51.92 -0.42 0.60 15 24 H 0.05 0.82 7.85 -51.93 -0.41 0.41 15 25 H 0.05 0.88 7.88 -51.93 -0.41 0.47 15 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 201.91 15.07 3.04 3.04 Total: -1.00 -31.72 201.91 -5.86 -37.58 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.57 Total: -2.85 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.44 Total: -15.71 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.35 Total: -45.00 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -4.25 Total: 22.95 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -31.72 -5.86 -37.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023915869.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.446 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds