Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47094 * 90.00103 * 3 2 1 5 5 H 1.48496 * 109.47232 * 210.00275 * 3 2 1 6 6 H 1.48500 * 109.47091 * 330.00336 * 3 2 1 7 7 C 1.38808 * 119.99816 * 179.72552 * 2 1 3 8 8 H 1.08003 * 120.00366 * 21.10765 * 7 2 1 9 9 N 1.36940 * 119.99875 * 201.10385 * 7 2 1 10 10 C 1.50232 * 130.84090 * 9.94593 * 9 7 2 11 11 C 1.56859 * 100.58790 * 234.63160 * 10 9 7 12 12 C 1.54847 * 103.35755 * 326.65672 * 11 10 9 13 13 C 1.50236 * 130.83785 * 190.28790 * 9 7 2 14 14 C 1.55840 * 101.05048 * 233.93034 * 13 9 7 15 15 C 1.55477 * 103.32707 * 326.97397 * 14 13 9 16 16 H 0.97003 * 120.00207 * 174.92905 * 1 2 3 17 17 H 1.09004 * 115.85457 * 359.68393 * 10 9 7 18 18 H 1.08997 * 110.43140 * 208.30552 * 11 10 9 19 19 H 1.09005 * 111.04064 * 85.29267 * 11 10 9 20 20 H 1.09000 * 110.62396 * 241.79048 * 12 11 10 21 21 H 1.09000 * 110.76618 * 118.82790 * 12 11 10 22 22 H 1.09008 * 115.86061 * 359.60586 * 13 9 7 23 23 H 1.09008 * 110.62805 * 85.55052 * 14 13 9 24 24 H 1.09003 * 110.62932 * 208.57086 * 14 13 9 25 25 H 1.08997 * 110.61102 * 241.58509 * 15 14 13 26 26 H 1.09004 * 110.89543 * 118.54948 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 0.0058 8 1 1.5245 -2.1077 -0.3267 9 7 3.3107 -1.2399 0.4330 10 6 4.1500 -0.1997 1.1190 11 6 5.3803 -0.1357 0.1480 12 6 5.5068 -1.5911 -0.3656 13 6 4.3395 -2.3319 0.3538 14 6 4.7685 -2.4468 1.8476 15 6 4.6390 -0.9886 2.3709 16 1 -0.4850 -0.8368 -0.0743 17 1 3.6596 0.7540 1.3140 18 1 6.2783 0.1595 0.6906 19 1 5.1907 0.5483 -0.6793 20 1 6.4676 -2.0177 -0.0775 21 1 5.3786 -1.6317 -1.4472 22 1 4.0123 -3.2603 -0.1144 23 1 4.0972 -3.1129 2.3898 24 1 5.7994 -2.7923 1.9255 25 1 5.6059 -0.6142 2.7071 26 1 3.9046 -0.9276 3.1742 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023915869.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = 21.278706 kcal Electronic energy + Delta-G solvation = -10018.836942 eV Core-core repulsion = 8290.796976 eV Total energy + Delta-G solvation = -1728.039965 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.67338 -34.85581 -31.33438 -31.14490 -30.20628 -25.57231 -22.93052 -21.82078 -20.29211 -19.29968 -17.65711 -16.08696 -15.71578 -15.27341 -15.15069 -13.51964 -13.37512 -13.20066 -13.02296 -12.64513 -12.36481 -12.09576 -11.72527 -11.42406 -11.25471 -11.10332 -10.73897 -10.71155 -9.22980 -8.60095 -5.37325 1.34991 1.51232 1.69857 2.54138 3.01929 3.24790 3.94299 3.96462 4.08694 4.36586 4.38794 4.52905 4.70063 4.74364 4.79549 4.91146 5.09584 5.13746 5.17015 5.41094 5.50825 5.57562 5.60258 6.06732 6.78737 7.43322 8.30079 8.90708 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.058593 B = 0.023146 C = 0.020583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.761687 B = 1209.430977 C = 1360.026181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.091 4.091 3 Si 1.104 2.896 4 H -0.280 1.280 5 H -0.245 1.245 6 H -0.313 1.313 7 C -0.291 4.291 8 H 0.040 0.960 9 N -0.641 5.641 10 C 0.094 3.906 11 C -0.132 4.132 12 C -0.120 4.120 13 C 0.118 3.882 14 C -0.117 4.117 15 C -0.122 4.122 16 H 0.244 0.756 17 H 0.073 0.927 18 H 0.096 0.904 19 H 0.050 0.950 20 H 0.096 0.904 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.044 0.956 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.797 -1.239 2.769 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.283 4.283 3 Si 0.932 3.068 4 H -0.208 1.208 5 H -0.170 1.170 6 H -0.242 1.242 7 C -0.420 4.420 8 H 0.058 0.942 9 N -0.366 5.366 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.159 4.159 13 C 0.012 3.988 14 C -0.156 4.156 15 C -0.161 4.161 16 H 0.053 0.947 17 H 0.091 0.909 18 H 0.115 0.885 19 H 0.069 0.931 20 H 0.115 0.885 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.446 0.346 2.752 14.710 hybrid contribution -0.923 -1.906 -0.293 2.137 sum 13.524 -1.559 2.459 13.834 Atomic orbital electron populations 1.71036 1.06975 1.28654 1.54912 1.27087 0.96434 1.04499 1.00248 0.83379 0.74767 0.71782 0.76873 1.20785 1.17007 1.24206 1.19963 0.87141 0.94635 1.40280 0.94243 1.47060 1.08145 1.13752 1.67647 1.23707 0.91037 0.92413 0.93900 1.23290 0.97797 0.97280 0.98708 1.22878 0.98552 0.95458 0.99001 1.23266 0.88224 0.91491 0.95819 1.22958 1.01242 0.95944 0.95475 1.22956 1.00886 0.96100 0.96166 0.94698 0.90902 0.88522 0.93104 0.88527 0.93427 0.90325 0.93675 0.88407 0.88463 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.15 13.70 21.65 0.30 -64.85 15 2 C -0.09 -5.65 5.50 84.86 0.47 -5.18 15 3 Si 1.10 55.31 25.00 68.60 1.72 57.02 15 4 H -0.28 -13.09 6.60 99.48 0.66 -12.44 15 5 H -0.25 -10.92 4.90 99.48 0.49 -10.43 15 6 H -0.31 -16.05 7.11 99.48 0.71 -15.34 15 7 C -0.29 -17.65 10.81 84.03 0.91 -16.74 15 8 H 0.04 2.59 8.06 -2.91 -0.02 2.57 15 9 N -0.64 -31.77 2.82 -613.33 -1.73 -33.49 15 10 C 0.09 3.90 3.63 46.60 0.17 4.07 15 11 C -0.13 -4.40 6.26 32.58 0.20 -4.19 15 12 C -0.12 -3.79 6.46 32.21 0.21 -3.58 15 13 C 0.12 4.53 5.43 46.23 0.25 4.78 15 14 C -0.12 -3.73 6.49 32.43 0.21 -3.52 15 15 C -0.12 -4.10 6.49 32.43 0.21 -3.89 15 16 H 0.24 16.47 8.73 -92.71 -0.81 15.66 15 17 H 0.07 3.25 3.39 -2.38 -0.01 3.24 15 18 H 0.10 2.44 7.88 -2.39 -0.02 2.42 15 19 H 0.05 1.83 6.50 -2.38 -0.02 1.81 15 20 H 0.10 2.27 7.85 -2.39 -0.02 2.25 15 21 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.08 3.05 8.14 -2.38 -0.02 3.03 15 23 H 0.04 1.52 8.14 -2.38 -0.02 1.50 15 24 H 0.10 2.31 7.85 -2.39 -0.02 2.29 15 25 H 0.10 2.47 7.88 -2.39 -0.02 2.45 15 26 H 0.04 1.55 8.14 -2.38 -0.02 1.53 15 Total: -1.00 -71.23 201.91 3.75 -67.47 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.84 Total: 2.12 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 2.63 Total: -28.27 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -1.43 Total: -98.34 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 1.72 Total: 57.02 kcal Total: -71.23 3.75 -67.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023915869.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.751 kcal (2) G-P(sol) polarization free energy of solvation -71.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds