Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50709 * 109.47241 * 2 1 4 4 N 1.31395 * 125.15378 * 269.98119 * 3 2 1 5 5 N 1.40456 * 107.17899 * 179.76213 * 4 3 2 6 6 H 0.97002 * 127.02223 * 180.26200 * 5 4 3 7 7 C 1.37030 * 105.96540 * 0.40311 * 5 4 3 8 8 C 1.40369 * 126.31320 * 179.85726 * 7 5 4 9 9 H 1.08002 * 120.00500 * 359.71854 * 8 7 5 10 10 C 1.40270 * 119.99779 * 179.43559 * 8 7 5 11 11 N 1.30644 * 120.00022 * 0.28004 * 10 8 7 12 12 Si 1.86803 * 120.00024 * 180.27829 * 10 8 7 13 13 H 1.48490 * 109.47019 * 60.00156 * 12 10 8 14 14 H 1.48504 * 109.47032 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46993 * 300.00123 * 12 10 8 16 16 N 1.32230 * 125.15954 * 89.99673 * 3 2 1 17 17 H 1.09001 * 109.47500 * 180.02562 * 1 2 3 18 18 H 1.09004 * 109.47099 * 300.00150 * 1 2 3 19 19 H 1.08998 * 109.47499 * 59.99845 * 1 2 3 20 20 H 1.08995 * 109.47336 * 239.99765 * 2 1 3 21 21 H 1.09005 * 109.47456 * 119.99724 * 2 1 3 22 22 H 0.96996 * 120.00314 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2849 2.1340 -1.0743 5 7 2.7248 3.3955 -0.6409 6 1 2.9852 4.1462 -1.1973 7 6 2.7142 3.3483 0.7286 8 6 3.0814 4.3866 1.5990 9 1 3.4159 5.3329 1.2001 10 6 3.0084 4.1970 2.9869 11 7 2.6037 3.0524 3.4694 12 14 3.4897 5.5813 4.1452 13 1 2.6196 6.7588 3.8977 14 1 3.3253 5.1304 5.5506 15 1 4.9073 5.9546 3.9082 16 7 2.2861 2.1388 1.0810 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 1.8933 -0.5138 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 2.5536 2.9212 4.4292 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034285366.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = 37.182799 kcal Electronic energy + Delta-G solvation = -9185.406491 eV Core-core repulsion = 7354.515835 eV Total energy + Delta-G solvation = -1830.890655 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.65944 -35.71047 -34.65272 -31.76429 -31.10972 -27.77878 -24.89090 -22.55827 -20.47686 -19.07702 -17.88950 -16.54188 -15.65515 -15.29156 -14.80138 -14.48289 -13.55290 -13.25588 -12.84065 -12.76419 -12.34664 -12.17346 -11.84944 -11.77679 -11.25747 -10.18929 -9.83810 -9.81935 -8.49688 -6.73600 1.24515 1.45444 1.59831 1.68322 2.22469 2.60424 2.69302 3.44422 3.91780 4.22092 4.56413 4.70983 4.80730 5.01880 5.15321 5.34350 5.38493 5.72138 6.05572 6.34462 6.50347 6.78892 7.28446 8.24813 8.46018 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.077702 B = 0.014871 C = 0.012957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.264236 B = 1882.414446 C = 2160.524008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C 0.199 3.801 4 N -0.431 5.431 5 N -0.566 5.566 6 H 0.426 0.574 7 C 0.376 3.624 8 C -0.478 4.478 9 H 0.102 0.898 10 C 0.035 3.965 11 N -0.769 5.769 12 Si 1.005 2.995 13 H -0.256 1.256 14 H -0.269 1.269 15 H -0.256 1.256 16 N -0.597 5.597 17 H 0.094 0.906 18 H 0.036 0.964 19 H 0.044 0.956 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 0.355 0.407 0.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.084 4.084 4 N -0.267 5.267 5 N -0.286 5.286 6 H 0.269 0.731 7 C 0.127 3.873 8 C -0.519 4.519 9 H 0.120 0.880 10 C -0.188 4.188 11 N -0.392 5.392 12 Si 0.824 3.176 13 H -0.181 1.181 14 H -0.193 1.193 15 H -0.180 1.180 16 N -0.334 5.334 17 H 0.113 0.887 18 H 0.055 0.945 19 H 0.064 0.936 20 H 0.106 0.894 21 H 0.097 0.903 22 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.902 -0.258 0.171 0.953 hybrid contribution 0.454 1.199 0.066 1.284 sum -0.447 0.940 0.237 1.068 Atomic orbital electron populations 1.21554 0.93263 1.02901 1.00756 1.19803 0.96938 0.86322 1.02982 1.24791 0.97158 0.98891 0.87571 1.77495 1.32662 0.93465 1.23072 1.47955 1.61846 1.12793 1.06040 0.73103 1.21491 0.90909 0.93272 0.81641 1.18917 1.43689 0.98257 0.91024 0.87954 1.26961 0.92587 0.99332 0.99956 1.70088 1.29189 1.24797 1.15162 0.84930 0.79793 0.76975 0.75903 1.18054 1.19316 1.18043 1.71264 1.30337 1.04026 1.27729 0.88737 0.94503 0.93633 0.89442 0.90312 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.89 71.98 0.71 -3.64 14 2 C -0.02 -0.83 6.56 29.85 0.20 -0.63 14 3 C 0.20 10.52 7.34 138.74 1.02 11.53 14 4 N -0.43 -22.88 12.80 -51.54 -0.66 -23.54 14 5 N -0.57 -29.41 7.58 -55.50 -0.42 -29.83 14 6 H 0.43 18.77 8.96 -213.09 -1.91 16.86 14 7 C 0.38 21.60 7.70 133.83 1.03 22.63 14 8 C -0.48 -25.52 9.47 23.28 0.22 -25.29 14 9 H 0.10 4.88 7.85 -2.91 -0.02 4.86 14 10 C 0.03 1.76 5.50 85.36 0.47 2.23 14 11 N -0.77 -41.77 11.93 21.88 0.26 -41.51 14 12 Si 1.01 36.85 29.56 68.60 2.03 38.88 14 13 H -0.26 -8.98 7.11 99.48 0.71 -8.28 14 14 H -0.27 -9.41 7.11 99.48 0.71 -8.71 14 15 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 16 N -0.60 -35.33 9.40 -185.90 -1.75 -37.07 14 17 H 0.09 2.43 8.14 -2.39 -0.02 2.41 14 18 H 0.04 1.40 8.14 -2.38 -0.02 1.38 14 19 H 0.04 1.59 8.14 -2.39 -0.02 1.57 14 20 H 0.09 3.08 8.14 -2.39 -0.02 3.06 14 21 H 0.08 3.09 8.14 -2.38 -0.02 3.07 14 22 H 0.29 13.91 8.29 -92.71 -0.77 13.14 14 Total: -1.00 -67.58 204.88 2.43 -65.15 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.68 Total: 21.10 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 3.65 Total: 6.83 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -2.57 Total: -131.96 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -67.58 2.43 -65.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034285366.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.333 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds