Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36939 * 120.00147 * 2 1 4 4 H 1.08001 * 120.00532 * 201.85395 * 3 2 1 5 5 C 1.38811 * 120.00018 * 21.84655 * 3 2 1 6 6 N 1.31627 * 119.99925 * 11.19977 * 5 3 2 7 7 Si 1.86794 * 120.00425 * 191.19930 * 5 3 2 8 8 H 1.48501 * 109.47201 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47358 * 119.99934 * 7 5 3 10 10 H 1.48500 * 109.47251 * 240.00215 * 7 5 3 11 11 C 1.46497 * 120.00383 * 179.97438 * 2 1 3 12 12 C 1.54635 * 111.03571 * 52.02022 * 11 2 1 13 13 C 1.51101 * 104.72846 * 217.33606 * 12 11 2 14 14 C 1.30534 * 111.10492 * 16.44127 * 13 12 11 15 15 C 1.51108 * 111.10082 * 359.97438 * 14 13 12 16 16 H 1.09000 * 109.47394 * 275.15816 * 1 2 3 17 17 H 1.09002 * 109.47313 * 35.15840 * 1 2 3 18 18 H 1.09008 * 109.47148 * 155.15631 * 1 2 3 19 19 H 0.96991 * 119.99951 * 179.97438 * 6 5 3 20 20 H 1.09000 * 110.91984 * 176.03982 * 11 2 1 21 21 H 1.08999 * 110.39165 * 336.15299 * 12 11 2 22 22 H 1.09003 * 110.38342 * 98.52862 * 12 11 2 23 23 H 1.08004 * 124.45223 * 196.46028 * 13 12 11 24 24 H 1.07990 * 124.44987 * 180.02562 * 14 13 12 25 25 H 1.08997 * 110.38555 * 224.75235 * 15 14 13 26 26 H 1.08991 * 110.48320 * 102.42699 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1714 1.2196 -0.3481 5 6 1.5304 2.3449 0.4473 6 7 0.3745 2.2740 1.0730 7 14 2.3373 4.0051 0.1615 8 1 3.6220 3.8137 -0.5584 9 1 1.4360 4.8601 -0.6521 10 1 2.5959 4.6614 1.4683 11 6 2.1975 -1.2687 0.0006 12 6 1.7059 -2.1940 -1.1367 13 6 1.7433 -3.5836 -0.5445 14 6 1.8219 -3.5377 0.7577 15 6 1.8506 -2.1097 1.2509 16 1 -0.3634 0.0924 1.0235 17 1 -0.3634 0.8402 -0.5918 18 1 -0.3634 -0.9326 -0.4318 19 1 -0.0580 3.0838 1.3859 20 1 3.2717 -1.0978 -0.0698 21 1 0.6883 -1.9320 -1.4264 22 1 2.3747 -2.1289 -1.9950 23 1 1.7098 -4.4953 -1.1227 24 1 1.8621 -4.4062 1.3982 25 1 2.6173 -1.9875 2.0159 26 1 0.8751 -1.8218 1.6427 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039078209.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 41.228558 kcal Electronic energy + Delta-G solvation = -9623.011507 eV Core-core repulsion = 7895.836633 eV Total energy + Delta-G solvation = -1727.174875 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.13263 -34.37147 -30.85717 -27.43086 -27.04143 -25.91656 -22.49867 -18.81913 -18.14691 -16.81587 -15.51790 -15.00498 -14.01757 -12.79371 -12.43026 -12.09156 -11.96217 -11.53034 -10.96219 -10.78727 -10.52056 -10.50722 -10.33771 -10.22891 -9.88006 -9.77090 -8.50785 -8.26056 -6.69361 -5.67277 -3.12653 2.77791 3.40546 3.47306 3.49705 4.53081 5.33125 5.35360 5.56448 5.65555 5.93508 5.99497 6.31619 6.44526 6.53404 6.63607 6.76675 6.88142 7.08288 7.12635 7.45024 7.48180 7.80464 7.86300 8.45152 9.29422 9.93265 10.42508 11.37499 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.092111 B = 0.013636 C = 0.013209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.907887 B = 2052.849856 C = 2119.266829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.253 4.253 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.178 3.822 12 C -0.122 4.122 13 C -0.173 4.173 14 C -0.167 4.167 15 C -0.122 4.122 16 H 0.029 0.971 17 H 0.043 0.957 18 H 0.001 0.999 19 H 0.251 0.749 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.057 0.943 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -7.427 -1.966 7.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.736 3.264 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.069 3.931 12 C -0.161 4.161 13 C -0.192 4.192 14 C -0.185 4.185 15 C -0.162 4.162 16 H 0.047 0.953 17 H 0.061 0.939 18 H 0.020 0.980 19 H 0.061 0.939 20 H 0.088 0.912 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.643 -7.231 -1.910 7.658 hybrid contribution 0.292 0.802 0.003 0.853 sum 1.935 -6.430 -1.907 6.980 Atomic orbital electron populations 1.20786 0.82667 0.95447 0.99387 1.43934 1.01871 1.00240 1.85213 1.19317 0.97638 0.85370 1.35926 0.91278 1.25026 0.97690 0.98509 0.98683 1.70092 1.17491 1.26781 1.41170 0.86155 0.78623 0.84231 0.77378 1.20351 1.21664 1.21765 1.21154 0.95577 0.85571 0.90834 1.21950 1.01962 0.92417 0.99720 1.23229 1.01818 0.97921 0.96198 1.23318 1.00801 0.98080 0.96319 1.22040 1.01923 0.91714 1.00498 0.95267 0.93860 0.98019 0.93870 0.91167 0.90442 0.92345 0.87137 0.87191 0.92382 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.12 7.75 59.84 0.46 4.58 15 2 N -0.59 -15.39 2.96 -171.53 -0.51 -15.90 15 3 C -0.25 -7.14 9.64 -15.06 -0.15 -7.28 15 4 H 0.07 1.90 7.82 -52.49 -0.41 1.49 15 5 C 0.00 -0.04 5.14 -17.43 -0.09 -0.13 15 6 N -0.91 -27.05 10.54 55.49 0.58 -26.46 15 7 Si 0.91 22.21 29.57 -169.99 -5.03 17.18 15 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 11 C 0.18 3.87 3.66 -66.22 -0.24 3.63 15 12 C -0.12 -2.28 6.35 -26.83 -0.17 -2.45 15 13 C -0.17 -2.81 10.78 -35.70 -0.38 -3.19 15 14 C -0.17 -2.76 10.78 -35.70 -0.38 -3.14 15 15 C -0.12 -2.42 6.44 -26.83 -0.17 -2.59 15 16 H 0.03 0.80 7.35 -51.93 -0.38 0.42 15 17 H 0.04 1.18 7.21 -51.93 -0.37 0.80 15 18 H 0.00 0.03 6.05 -51.92 -0.31 -0.28 15 19 H 0.25 7.21 8.31 -40.82 -0.34 6.87 15 20 H 0.07 1.53 7.94 -51.93 -0.41 1.12 15 21 H 0.08 1.52 5.95 -51.93 -0.31 1.22 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 24 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 26 H 0.08 1.64 7.23 -51.93 -0.38 1.26 15 LS Contribution 215.18 15.07 3.24 3.24 Total: -1.00 -29.60 215.18 -6.23 -35.83 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.40 Total: -3.32 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.13 Total: -10.57 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.08 Total: -42.36 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -29.60 -6.23 -35.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078209.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.061 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds