Wall clock time and date at job start Mon Mar 30 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33369 * 125.45396 * 2 1 4 4 C 1.30817 * 109.87475 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.02077 * 180.02562 * 4 3 2 6 6 N 1.35307 * 107.95924 * 359.97438 * 4 3 2 7 7 C 1.37432 * 126.87361 * 179.97438 * 6 4 3 8 8 H 1.08002 * 120.00214 * 0.02562 * 7 6 4 9 9 C 1.39001 * 120.00091 * 179.72479 * 7 6 4 10 10 N 1.31274 * 119.99934 * 0.27690 * 9 7 6 11 11 Si 1.86798 * 120.00317 * 180.27837 * 9 7 6 12 12 H 1.48506 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 119.99865 * 11 9 7 14 14 H 1.48498 * 109.47150 * 240.00075 * 11 9 7 15 15 N 1.30834 * 125.45855 * 180.28805 * 2 1 3 16 16 H 1.09002 * 109.47454 * 89.97180 * 1 2 3 17 17 H 1.09003 * 109.47171 * 209.97442 * 1 2 3 18 18 H 1.09006 * 109.47497 * 329.97536 * 1 2 3 19 19 H 1.09002 * 109.46900 * 269.99716 * 5 4 3 20 20 H 1.09003 * 109.47273 * 29.99753 * 5 4 3 21 21 H 1.08996 * 109.47170 * 149.99995 * 5 4 3 22 22 H 0.97005 * 119.99949 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2806 1.0864 0.0000 4 6 3.5407 0.7351 -0.0006 5 6 4.7217 1.6711 -0.0002 6 7 3.5968 -0.6168 -0.0003 7 6 4.7295 -1.3951 -0.0013 8 1 5.7043 -0.9301 -0.0018 9 6 4.6207 -2.7809 0.0049 10 7 3.4359 -3.3462 0.0061 11 14 6.1602 -3.8388 0.0115 12 1 7.3611 -2.9651 0.0084 13 1 6.1703 -4.6905 1.2279 14 1 6.1732 -4.7015 -1.1971 15 7 2.2659 -1.0657 -0.0054 16 1 -0.3634 0.0005 -1.0277 17 1 -0.3634 -0.8902 0.5134 18 1 -0.3634 0.8898 0.5142 19 1 5.0062 1.8975 -1.0278 20 1 4.4537 2.5940 0.5143 21 1 5.5593 1.1990 0.5131 22 1 3.3599 -4.3132 0.0100 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041042367.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:26 Heat of formation + Delta-G solvation = 73.620982 kcal Electronic energy + Delta-G solvation = -9312.539903 eV Core-core repulsion = 7483.229326 eV Total energy + Delta-G solvation = -1829.310577 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.20724 -34.01599 -31.96684 -30.55757 -28.40597 -26.74613 -24.39661 -19.91541 -18.96446 -17.44996 -15.31929 -14.36171 -14.28241 -13.07355 -12.59253 -12.44997 -11.92266 -11.72769 -11.71144 -11.37858 -11.20331 -10.89188 -10.60223 -9.86987 -9.67271 -8.29635 -8.15985 -7.68781 -6.63393 -4.40050 2.91479 3.02588 3.08413 3.50772 3.79025 4.39045 4.64433 4.96224 5.54077 5.97603 6.24609 6.28800 6.33278 6.46869 6.53602 6.73308 6.89049 7.13349 7.78575 8.10443 8.38409 8.72373 9.30729 10.00581 10.34059 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.060433 B = 0.018259 C = 0.014167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.211508 B = 1533.133475 C = 1975.894860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C 0.115 3.885 3 N -0.567 5.567 4 C 0.115 3.885 5 C -0.041 4.041 6 N -0.156 5.156 7 C -0.325 4.325 8 H 0.121 0.879 9 C 0.048 3.952 10 N -0.769 5.769 11 Si 0.935 3.065 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.273 1.273 15 N -0.288 5.288 16 H 0.058 0.942 17 H 0.063 0.937 18 H 0.063 0.937 19 H 0.061 0.939 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 1.656 0.068 3.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.163 4.163 3 N -0.301 5.301 4 C -0.150 4.150 5 C -0.101 4.101 6 N 0.067 4.933 7 C -0.460 4.460 8 H 0.138 0.862 9 C -0.169 4.169 10 N -0.396 5.396 11 Si 0.759 3.241 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.198 1.198 15 N -0.128 5.128 16 H 0.077 0.923 17 H 0.082 0.918 18 H 0.082 0.918 19 H 0.079 0.921 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.082 1.117 0.068 2.364 hybrid contribution 0.924 -0.596 -0.020 1.100 sum 3.006 0.520 0.048 3.051 Atomic orbital electron populations 1.19617 0.86795 1.01550 1.01241 1.23831 0.97167 0.87561 1.07727 1.69805 1.00132 1.31321 1.28832 1.23441 0.94198 0.84254 1.13136 1.19772 0.92427 0.96300 1.01572 1.46240 1.05173 1.03690 1.38150 1.20013 0.84067 0.88576 1.53308 0.86175 1.25684 0.98625 0.97527 0.95100 1.70211 1.22807 1.11477 1.35114 0.85753 0.80201 0.79637 0.78527 1.18514 1.19835 1.19835 1.78723 0.85941 1.19371 1.28729 0.92327 0.91766 0.91837 0.92072 0.91234 0.91649 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.67 10.51 36.00 0.38 -0.29 14 2 C 0.11 3.09 8.14 -156.64 -1.27 1.81 14 3 N -0.57 -15.29 11.19 -7.92 -0.09 -15.38 14 4 C 0.11 3.00 7.97 -154.91 -1.23 1.76 14 5 C -0.04 -0.81 10.14 36.00 0.37 -0.45 14 6 N -0.16 -4.49 3.74 -8.96 -0.03 -4.53 14 7 C -0.33 -8.77 9.99 -14.76 -0.15 -8.91 14 8 H 0.12 2.88 7.11 -52.49 -0.37 2.51 14 9 C 0.05 1.26 5.50 -17.51 -0.10 1.16 14 10 N -0.77 -21.53 11.88 55.50 0.66 -20.87 14 11 Si 0.94 18.88 29.55 -169.99 -5.02 13.86 14 12 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 13 H -0.27 -5.46 7.11 56.52 0.40 -5.05 14 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 15 N -0.29 -8.57 10.61 32.46 0.34 -8.23 14 16 H 0.06 1.11 8.14 -51.93 -0.42 0.68 14 17 H 0.06 1.26 8.14 -51.93 -0.42 0.83 14 18 H 0.06 1.17 8.14 -51.93 -0.42 0.75 14 19 H 0.06 1.10 8.14 -51.93 -0.42 0.67 14 20 H 0.07 1.23 8.14 -51.93 -0.42 0.81 14 21 H 0.06 1.19 7.40 -51.93 -0.38 0.81 14 22 H 0.28 6.98 8.31 -40.82 -0.34 6.64 14 LS Contribution 204.07 15.07 3.08 3.08 Total: -1.00 -32.91 204.07 -5.08 -37.99 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -2.01 Total: -1.01 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.01 Total: -4.91 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.88 Total: -49.01 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -32.91 -5.08 -37.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041042367.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.614 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds