Wall clock time and date at job start Mon Mar 30 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33369 * 125.45396 * 2 1 4 4 C 1.30817 * 109.87475 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.02077 * 180.02562 * 4 3 2 6 6 N 1.35307 * 107.95924 * 359.97438 * 4 3 2 7 7 C 1.37432 * 126.87361 * 179.97438 * 6 4 3 8 8 H 1.08002 * 120.00214 * 0.02562 * 7 6 4 9 9 C 1.39001 * 120.00091 * 179.72479 * 7 6 4 10 10 N 1.31274 * 119.99934 * 0.27690 * 9 7 6 11 11 Si 1.86798 * 120.00317 * 180.27837 * 9 7 6 12 12 H 1.48506 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47276 * 119.99865 * 11 9 7 14 14 H 1.48498 * 109.47150 * 240.00075 * 11 9 7 15 15 N 1.30834 * 125.45855 * 180.28805 * 2 1 3 16 16 H 1.09002 * 109.47454 * 89.97180 * 1 2 3 17 17 H 1.09003 * 109.47171 * 209.97442 * 1 2 3 18 18 H 1.09006 * 109.47497 * 329.97536 * 1 2 3 19 19 H 1.09002 * 109.46900 * 269.99716 * 5 4 3 20 20 H 1.09003 * 109.47273 * 29.99753 * 5 4 3 21 21 H 1.08996 * 109.47170 * 149.99995 * 5 4 3 22 22 H 0.97005 * 119.99949 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2806 1.0864 0.0000 4 6 3.5407 0.7351 -0.0006 5 6 4.7217 1.6711 -0.0002 6 7 3.5968 -0.6168 -0.0003 7 6 4.7295 -1.3951 -0.0013 8 1 5.7043 -0.9301 -0.0018 9 6 4.6207 -2.7809 0.0049 10 7 3.4359 -3.3462 0.0061 11 14 6.1602 -3.8388 0.0115 12 1 7.3611 -2.9651 0.0084 13 1 6.1703 -4.6905 1.2279 14 1 6.1732 -4.7015 -1.1971 15 7 2.2659 -1.0657 -0.0054 16 1 -0.3634 0.0005 -1.0277 17 1 -0.3634 -0.8902 0.5134 18 1 -0.3634 0.8898 0.5142 19 1 5.0062 1.8975 -1.0278 20 1 4.4537 2.5940 0.5143 21 1 5.5593 1.1990 0.5131 22 1 3.3599 -4.3132 0.0100 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041042367.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:26 Heat of formation + Delta-G solvation = 51.922510 kcal Electronic energy + Delta-G solvation = -9313.480820 eV Core-core repulsion = 7483.229326 eV Total energy + Delta-G solvation = -1830.251494 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.22585 -35.97825 -33.86394 -32.52984 -30.13701 -28.65445 -26.35272 -21.86622 -20.94969 -19.44581 -17.26936 -16.34030 -15.98072 -14.92788 -14.36337 -14.05564 -13.71768 -13.40293 -13.35540 -13.15927 -12.82320 -12.66384 -12.15244 -11.83752 -11.54373 -10.31652 -10.23393 -9.75227 -8.56487 -6.44138 1.20365 1.38484 1.58104 1.67132 2.09054 2.38948 2.72308 3.01357 3.75952 4.23104 4.51678 4.73394 4.81316 4.86194 4.90701 5.03016 5.15197 5.24772 5.84841 6.12008 6.38995 6.74262 7.33095 7.95826 8.44379 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.060433 B = 0.018259 C = 0.014167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.211508 B = 1533.133475 C = 1975.894860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C 0.102 3.898 3 N -0.585 5.585 4 C 0.104 3.896 5 C -0.038 4.038 6 N -0.182 5.182 7 C -0.357 4.357 8 H 0.145 0.855 9 C -0.003 4.003 10 N -0.820 5.820 11 Si 1.022 2.978 12 H -0.239 1.239 13 H -0.270 1.270 14 H -0.270 1.270 15 N -0.340 5.340 16 H 0.076 0.924 17 H 0.070 0.930 18 H 0.086 0.914 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 1.970 0.046 4.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.176 4.176 3 N -0.319 5.319 4 C -0.161 4.161 5 C -0.097 4.097 6 N 0.042 4.958 7 C -0.490 4.490 8 H 0.162 0.838 9 C -0.216 4.216 10 N -0.448 5.448 11 Si 0.840 3.160 12 H -0.162 1.162 13 H -0.195 1.195 14 H -0.196 1.196 15 N -0.179 5.179 16 H 0.095 0.905 17 H 0.088 0.912 18 H 0.104 0.896 19 H 0.099 0.901 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.469 1.451 0.045 3.761 hybrid contribution 0.437 -0.611 -0.016 0.751 sum 3.906 0.840 0.029 3.995 Atomic orbital electron populations 1.19788 0.83242 1.02960 1.02839 1.24889 0.99490 0.87037 1.06225 1.69871 1.00762 1.31499 1.29770 1.24666 0.95760 0.84471 1.11204 1.19990 0.90528 0.95831 1.03378 1.46535 1.05241 1.04807 1.39200 1.20781 0.84668 0.89527 1.53977 0.83803 1.26961 1.02407 0.98621 0.93586 1.70365 1.25840 1.12099 1.36451 0.84503 0.75841 0.77300 0.78377 1.16163 1.19540 1.19551 1.78613 0.87157 1.21489 1.30653 0.90541 0.91150 0.89564 0.90078 0.89196 0.90142 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.18 10.51 71.23 0.75 -0.43 14 2 C 0.10 5.49 8.14 138.55 1.13 6.62 14 3 N -0.58 -31.29 11.19 -178.96 -2.00 -33.29 14 4 C 0.10 5.39 7.97 137.95 1.10 6.49 14 5 C -0.04 -1.42 10.14 71.24 0.72 -0.70 14 6 N -0.18 -10.50 3.74 -182.27 -0.68 -11.18 14 7 C -0.36 -19.09 9.99 84.00 0.84 -18.25 14 8 H 0.14 6.66 7.11 -2.91 -0.02 6.64 14 9 C 0.00 -0.15 5.50 84.96 0.47 0.31 14 10 N -0.82 -46.67 11.88 21.66 0.26 -46.42 14 11 Si 1.02 37.89 29.55 68.60 2.03 39.92 14 12 H -0.24 -7.91 7.11 99.48 0.71 -7.21 14 13 H -0.27 -9.82 7.11 99.48 0.71 -9.11 14 14 H -0.27 -9.83 7.11 99.48 0.71 -9.12 14 15 N -0.34 -20.58 10.61 -51.21 -0.54 -21.12 14 16 H 0.08 2.80 8.14 -2.39 -0.02 2.78 14 17 H 0.07 2.72 8.14 -2.39 -0.02 2.70 14 18 H 0.09 3.05 8.14 -2.38 -0.02 3.03 14 19 H 0.08 2.69 8.14 -2.39 -0.02 2.67 14 20 H 0.09 2.95 8.14 -2.39 -0.02 2.93 14 21 H 0.08 2.72 7.40 -2.39 -0.02 2.70 14 22 H 0.28 14.45 8.31 -92.70 -0.77 13.68 14 Total: -1.00 -71.63 204.07 5.28 -66.36 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.22 Total: 11.69 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.00 Total: -5.96 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -2.97 Total: -112.01 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -71.63 5.28 -66.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041042367.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.280 kcal (2) G-P(sol) polarization free energy of solvation -71.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds