Wall clock time and date at job start Mon Mar 30 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47516 * 2 1 4 4 N 1.30446 * 126.07081 * 90.02232 * 3 2 1 5 5 O 1.21280 * 110.68299 * 179.73874 * 4 3 2 6 6 C 1.34746 * 109.53676 * 0.02562 * 5 4 3 7 7 C 1.40340 * 126.79646 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00056 * 174.31162 * 7 6 5 9 9 C 1.40458 * 120.00027 * 354.31359 * 7 6 5 10 10 N 1.30501 * 120.00084 * 5.98673 * 9 7 6 11 11 Si 1.86803 * 120.00000 * 185.98629 * 9 7 6 12 12 H 1.48497 * 109.46791 * 94.98025 * 11 9 7 13 13 H 1.48492 * 109.47056 * 214.98181 * 11 9 7 14 14 H 1.48503 * 109.47101 * 334.98211 * 11 9 7 15 15 N 1.33331 * 106.40977 * 0.02562 * 6 5 4 16 16 H 1.08999 * 109.47478 * 180.02562 * 1 2 3 17 17 H 1.09003 * 109.47072 * 300.00102 * 1 2 3 18 18 H 1.08997 * 109.47030 * 59.99559 * 1 2 3 19 19 H 1.09003 * 109.47072 * 239.99898 * 2 1 3 20 20 H 1.08997 * 109.47030 * 120.00440 * 2 1 3 21 21 H 0.96999 * 120.00332 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2889 2.1447 1.0544 5 8 2.6835 3.2455 0.7326 6 6 2.7187 3.3364 -0.6114 7 6 3.1177 4.4487 -1.3684 8 1 3.1910 4.3721 -2.4433 9 6 3.4219 5.6614 -0.7284 10 7 3.4472 5.7229 0.5750 11 14 3.7902 7.1862 -1.7427 12 1 2.5502 7.9881 -1.8988 13 1 4.8233 8.0009 -1.0543 14 1 4.2898 6.7815 -3.0813 15 7 2.2983 2.1609 -1.0796 16 1 -0.3634 -1.0276 0.0005 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8899 19 1 1.8933 -0.5139 -0.8900 20 1 1.8933 -0.5139 0.8899 21 1 3.6576 6.5602 1.0170 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045893622.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:10 Heat of formation + Delta-G solvation = 32.120396 kcal Electronic energy + Delta-G solvation = -9317.093834 eV Core-core repulsion = 7388.264994 eV Total energy + Delta-G solvation = -1928.828840 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.95900 -34.51624 -34.07695 -31.89025 -29.69324 -26.45345 -23.75700 -21.51332 -20.29711 -17.51436 -15.75074 -15.41181 -14.94210 -13.91907 -13.43995 -13.06640 -12.11195 -11.69782 -11.64029 -11.42304 -10.99572 -10.69190 -10.41976 -10.02194 -9.86862 -9.43149 -8.85431 -8.20728 -7.06099 -4.98961 2.80780 2.97375 3.03903 3.32913 3.75477 3.96421 5.02106 5.18990 5.46182 5.56617 5.86862 6.02623 6.19148 6.24676 6.65204 6.78397 6.88039 7.49446 7.93982 8.15315 8.36643 8.50557 9.93545 10.44537 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.116279 B = 0.013068 C = 0.012271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 240.742966 B = 2142.184774 C = 2281.173565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 C 0.158 3.842 4 N -0.474 5.474 5 O 0.043 5.957 6 C 0.301 3.699 7 C -0.418 4.418 8 H 0.112 0.888 9 C 0.071 3.929 10 N -0.765 5.765 11 Si 0.936 3.064 12 H -0.265 1.265 13 H -0.272 1.272 14 H -0.256 1.256 15 N -0.615 5.615 16 H 0.055 0.945 17 H 0.052 0.948 18 H 0.057 0.943 19 H 0.077 0.923 20 H 0.071 0.929 21 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 -0.911 -1.727 2.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 C -0.116 4.116 4 N -0.204 5.204 5 O -0.003 6.003 6 C 0.110 3.890 7 C -0.456 4.456 8 H 0.130 0.870 9 C -0.154 4.154 10 N -0.392 5.392 11 Si 0.759 3.241 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.180 1.180 15 N -0.359 5.359 16 H 0.074 0.926 17 H 0.072 0.928 18 H 0.076 0.924 19 H 0.095 0.905 20 H 0.090 0.910 21 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.429 -1.324 -1.070 2.222 hybrid contribution 0.251 0.908 -0.362 1.009 sum -1.178 -0.416 -1.432 1.900 Atomic orbital electron populations 1.21660 0.94942 1.00917 1.02304 1.19556 0.95573 0.88547 1.02287 1.24999 1.01340 0.98811 0.86422 1.74295 1.25955 0.95261 1.24890 1.85518 1.65152 1.25035 1.24607 1.24260 0.91072 0.93116 0.80586 1.18565 1.41237 0.90779 0.95024 0.86981 1.26198 0.92403 1.01396 0.95406 1.69646 1.30896 1.29112 1.09546 0.85823 0.79104 0.78903 0.80255 1.18970 1.19709 1.17963 1.72224 1.32024 1.03882 1.27763 0.92597 0.92836 0.92409 0.90464 0.91043 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.89 37.16 0.37 -2.00 14 2 C -0.02 -0.40 6.56 -27.88 -0.18 -0.59 14 3 C 0.16 4.14 7.43 -156.79 -1.17 2.98 14 4 N -0.47 -13.46 12.15 31.51 0.38 -13.08 14 5 O 0.04 1.30 9.77 15.15 0.15 1.45 14 6 C 0.30 8.84 7.81 -16.35 -0.13 8.71 14 7 C -0.42 -11.32 9.47 -37.96 -0.36 -11.68 14 8 H 0.11 2.85 7.86 -52.49 -0.41 2.44 14 9 C 0.07 1.75 5.50 -17.28 -0.09 1.65 14 10 N -0.76 -19.85 12.09 55.57 0.67 -19.18 14 11 Si 0.94 17.84 29.57 -169.99 -5.03 12.81 14 12 H -0.26 -4.95 7.11 56.52 0.40 -4.55 14 13 H -0.27 -5.00 7.11 56.52 0.40 -4.60 14 14 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 15 N -0.61 -17.46 11.61 -11.51 -0.13 -17.60 14 16 H 0.06 0.74 8.14 -51.93 -0.42 0.32 14 17 H 0.05 0.94 8.14 -51.93 -0.42 0.52 14 18 H 0.06 1.02 8.14 -51.93 -0.42 0.60 14 19 H 0.08 1.40 8.14 -51.93 -0.42 0.98 14 20 H 0.07 1.28 8.14 -51.93 -0.42 0.86 14 21 H 0.29 6.67 8.29 -40.82 -0.34 6.33 14 LS Contribution 200.03 15.07 3.01 3.01 Total: -1.00 -30.81 200.03 -4.17 -34.97 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -1.66 Total: -1.47 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.56 Total: -0.93 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.92 Total: -49.85 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.15 Total: 1.45 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -30.81 -4.17 -34.97 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045893622.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.094 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds