Wall clock time and date at job start Mon Mar 30 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47516 * 2 1 4 4 N 1.30446 * 126.07081 * 90.02232 * 3 2 1 5 5 O 1.21280 * 110.68299 * 179.73874 * 4 3 2 6 6 C 1.34746 * 109.53676 * 0.02562 * 5 4 3 7 7 C 1.40340 * 126.79646 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00056 * 174.31162 * 7 6 5 9 9 C 1.40458 * 120.00027 * 354.31359 * 7 6 5 10 10 N 1.30501 * 120.00084 * 5.98673 * 9 7 6 11 11 Si 1.86803 * 120.00000 * 185.98629 * 9 7 6 12 12 H 1.48497 * 109.46791 * 94.98025 * 11 9 7 13 13 H 1.48492 * 109.47056 * 214.98181 * 11 9 7 14 14 H 1.48503 * 109.47101 * 334.98211 * 11 9 7 15 15 N 1.33331 * 106.40977 * 0.02562 * 6 5 4 16 16 H 1.08999 * 109.47478 * 180.02562 * 1 2 3 17 17 H 1.09003 * 109.47072 * 300.00102 * 1 2 3 18 18 H 1.08997 * 109.47030 * 59.99559 * 1 2 3 19 19 H 1.09003 * 109.47072 * 239.99898 * 2 1 3 20 20 H 1.08997 * 109.47030 * 120.00440 * 2 1 3 21 21 H 0.96999 * 120.00332 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2889 2.1447 1.0544 5 8 2.6835 3.2455 0.7326 6 6 2.7187 3.3364 -0.6114 7 6 3.1177 4.4487 -1.3684 8 1 3.1910 4.3721 -2.4433 9 6 3.4219 5.6614 -0.7284 10 7 3.4472 5.7229 0.5750 11 14 3.7902 7.1862 -1.7427 12 1 2.5502 7.9881 -1.8988 13 1 4.8233 8.0009 -1.0543 14 1 4.2898 6.7815 -3.0813 15 7 2.2983 2.1609 -1.0796 16 1 -0.3634 -1.0276 0.0005 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5139 -0.8899 19 1 1.8933 -0.5139 -0.8900 20 1 1.8933 -0.5139 0.8899 21 1 3.6576 6.5602 1.0170 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045893622.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:10 Heat of formation + Delta-G solvation = 9.345757 kcal Electronic energy + Delta-G solvation = -9318.081416 eV Core-core repulsion = 7388.264994 eV Total energy + Delta-G solvation = -1929.816422 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.03983 -36.39379 -36.08037 -33.74065 -31.62988 -28.53245 -25.40608 -23.59696 -22.21689 -19.48377 -17.87722 -17.36493 -16.84777 -15.56267 -15.10233 -14.68847 -13.75047 -13.62663 -13.41925 -13.07559 -12.50431 -12.27852 -11.96424 -11.91661 -11.81598 -11.35250 -10.98245 -10.29129 -8.96837 -7.10978 0.98301 1.40556 1.55276 1.61616 2.03073 2.15288 2.99057 3.26040 3.56015 3.95768 4.39028 4.49483 4.57432 4.92059 4.93021 5.12286 5.26066 5.57272 5.86805 6.07432 6.29753 6.44055 8.05916 8.31176 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.116279 B = 0.013068 C = 0.012271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 240.742966 B = 2142.184774 C = 2281.173565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.023 4.023 3 C 0.165 3.835 4 N -0.503 5.503 5 O 0.008 5.992 6 C 0.267 3.733 7 C -0.435 4.435 8 H 0.122 0.878 9 C 0.028 3.972 10 N -0.796 5.796 11 Si 1.024 2.976 12 H -0.255 1.255 13 H -0.257 1.257 14 H -0.247 1.247 15 N -0.641 5.641 16 H 0.101 0.899 17 H 0.041 0.959 18 H 0.044 0.956 19 H 0.094 0.906 20 H 0.090 0.910 21 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 -0.371 -2.653 2.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.110 4.110 4 N -0.239 5.239 5 O -0.033 6.033 6 C 0.078 3.922 7 C -0.472 4.472 8 H 0.140 0.860 9 C -0.194 4.194 10 N -0.423 5.423 11 Si 0.840 3.160 12 H -0.179 1.179 13 H -0.181 1.181 14 H -0.170 1.170 15 N -0.387 5.387 16 H 0.120 0.880 17 H 0.060 0.940 18 H 0.063 0.937 19 H 0.112 0.888 20 H 0.109 0.891 21 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.421 -0.772 -1.982 2.558 hybrid contribution 0.259 0.724 -0.058 0.771 sum -1.163 -0.048 -2.040 2.348 Atomic orbital electron populations 1.21618 0.92702 1.03550 1.01075 1.19906 0.97399 0.84869 1.04047 1.26091 0.98897 1.00732 0.85268 1.74231 1.28324 0.95437 1.25900 1.85453 1.66774 1.26106 1.24968 1.24911 0.92067 0.94322 0.80871 1.19156 1.40957 0.91467 0.95666 0.85998 1.27439 0.91031 1.04371 0.96582 1.69700 1.29866 1.31087 1.11682 0.84573 0.79469 0.73519 0.78406 1.17942 1.18122 1.16971 1.72221 1.33521 1.04198 1.28736 0.87989 0.93994 0.93688 0.88760 0.89140 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.89 71.98 0.71 -3.47 14 2 C -0.02 -0.88 6.56 29.85 0.20 -0.69 14 3 C 0.16 8.68 7.43 138.61 1.03 9.71 14 4 N -0.50 -29.25 12.15 -56.65 -0.69 -29.94 14 5 O 0.01 0.47 9.77 64.29 0.63 1.10 14 6 C 0.27 16.09 7.81 85.06 0.66 16.75 14 7 C -0.44 -23.74 9.47 23.32 0.22 -23.52 14 8 H 0.12 6.19 7.86 -2.91 -0.02 6.17 14 9 C 0.03 1.34 5.50 85.43 0.47 1.81 14 10 N -0.80 -41.38 12.09 21.91 0.26 -41.11 14 11 Si 1.02 34.95 29.57 68.60 2.03 36.97 14 12 H -0.26 -8.32 7.11 99.48 0.71 -7.62 14 13 H -0.26 -8.14 7.11 99.48 0.71 -7.43 14 14 H -0.25 -8.01 7.11 99.48 0.71 -7.30 14 15 N -0.64 -37.06 11.61 -305.26 -3.54 -40.60 14 16 H 0.10 2.33 8.14 -2.39 -0.02 2.31 14 17 H 0.04 1.42 8.14 -2.39 -0.02 1.40 14 18 H 0.04 1.53 8.14 -2.39 -0.02 1.51 14 19 H 0.09 3.23 8.14 -2.39 -0.02 3.21 14 20 H 0.09 3.06 8.14 -2.39 -0.02 3.05 14 21 H 0.31 13.80 8.29 -92.71 -0.77 13.03 14 Total: -1.00 -67.88 200.03 3.21 -64.67 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.23 Total: 8.32 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 3.29 Total: 0.59 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.97 Total: -111.65 kcal Atomic # 8 Polarization: 0.47 SS G_CDS: 0.63 Total: 1.10 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.97 kcal Total: -67.88 3.21 -64.67 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045893622.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.015 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds