Wall clock time and date at job start Mon Mar 30 2020 01:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47686 * 2 1 4 4 C 1.50706 * 109.46898 * 120.00183 * 2 1 3 5 5 H 1.07995 * 120.00415 * 114.48594 * 4 2 1 6 6 C 1.37877 * 119.99717 * 294.47386 * 4 2 1 7 7 N 1.31510 * 119.99984 * 164.52444 * 6 4 2 8 8 Si 1.86797 * 120.00250 * 344.80700 * 6 4 2 9 9 H 1.48506 * 109.47000 * 269.72327 * 8 6 4 10 10 H 1.48501 * 109.47220 * 29.71787 * 8 6 4 11 11 H 1.48498 * 109.47236 * 149.72034 * 8 6 4 12 12 N 1.46505 * 109.46923 * 239.99784 * 2 1 3 13 13 C 1.34428 * 126.81961 * 324.70941 * 12 2 1 14 14 N 1.30838 * 108.07082 * 179.89420 * 13 12 2 15 15 C 1.33235 * 109.83237 * 0.38549 * 14 13 12 16 16 N 1.30715 * 108.94725 * 359.75763 * 15 14 13 17 17 H 1.08997 * 109.46997 * 174.02398 * 1 2 3 18 18 H 1.09001 * 109.46919 * 294.02170 * 1 2 3 19 19 H 1.08997 * 109.46976 * 54.01671 * 1 2 3 20 20 H 0.97005 * 120.00046 * 355.19968 * 7 6 4 21 21 H 1.07999 * 125.96990 * 0.04008 * 13 12 2 22 22 H 1.08001 * 125.53125 * 179.80461 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5778 -1.6375 1.1340 6 6 1.7957 -0.1767 2.4795 7 7 1.9532 -0.9201 3.5529 8 14 1.2437 1.6000 2.6468 9 1 2.4343 2.4780 2.7768 10 1 0.4681 1.9928 1.4429 11 1 0.3900 1.7416 3.8535 12 7 2.0183 -0.6907 -1.1962 13 6 1.4587 -1.7553 -1.7966 14 7 2.1940 -2.0704 -2.8320 15 6 3.2313 -1.2388 -2.9195 16 7 3.1675 -0.3759 -1.9398 17 1 -0.3633 -1.0221 -0.1070 18 1 -0.3633 0.4184 0.9387 19 1 -0.3633 0.6038 -0.8316 20 1 2.1679 -1.8618 3.4634 21 1 0.5580 -2.2607 -1.4811 22 1 3.9999 -1.2718 -3.6776 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246950.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:13 Heat of formation + Delta-G solvation = 63.435590 kcal Electronic energy + Delta-G solvation = -9328.999256 eV Core-core repulsion = 7499.247007 eV Total energy + Delta-G solvation = -1829.752249 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.86734 -37.00609 -34.24863 -32.21391 -30.85890 -27.06682 -24.62080 -22.70416 -21.70310 -19.85030 -17.86774 -16.54092 -16.28862 -15.34446 -15.15812 -14.67851 -14.48847 -13.55802 -13.52922 -12.90760 -12.54564 -12.07029 -11.51140 -11.36407 -10.95644 -10.77709 -10.68404 -10.42220 -8.89427 -6.59548 0.86578 1.46542 1.51653 1.62549 1.72565 2.07744 2.41886 2.91885 3.52511 3.90200 4.18147 4.29518 4.57198 4.65426 4.89368 5.19613 5.45899 5.57488 5.66022 5.83876 6.02325 6.39847 7.19440 7.23667 8.46795 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.076022 B = 0.015875 C = 0.015345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.225549 B = 1763.336665 C = 1824.253949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.251 3.749 3 H 0.054 0.946 4 C -0.623 4.623 5 H 0.014 0.986 6 C -0.003 4.003 7 N -0.922 5.922 8 Si 1.080 2.920 9 H -0.278 1.278 10 H -0.226 1.226 11 H -0.276 1.276 12 N -0.351 5.351 13 C 0.246 3.754 14 N -0.578 5.578 15 C 0.179 3.821 16 N -0.367 5.367 17 H 0.068 0.932 18 H 0.078 0.922 19 H 0.067 0.933 20 H 0.256 0.744 21 H 0.238 0.762 22 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 3.265 -8.083 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.149 3.851 3 H 0.072 0.928 4 C -0.661 4.661 5 H 0.032 0.968 6 C -0.204 4.204 7 N -0.555 5.555 8 Si 0.898 3.102 9 H -0.204 1.204 10 H -0.149 1.149 11 H -0.201 1.201 12 N -0.139 5.139 13 C -0.051 4.051 14 N -0.307 5.307 15 C -0.123 4.123 16 N -0.196 5.196 17 H 0.087 0.913 18 H 0.096 0.904 19 H 0.086 0.914 20 H 0.065 0.935 21 H 0.253 0.747 22 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -4.286 4.770 -7.002 9.494 hybrid contribution 0.755 -1.854 -0.524 2.069 sum -3.530 2.917 -7.525 8.809 Atomic orbital electron populations 1.22430 0.92996 1.03009 1.02819 1.19557 0.93584 0.93249 0.78705 0.92805 1.22188 1.41311 1.09922 0.92645 0.96771 1.27254 0.93196 1.09108 0.90818 1.70929 1.44890 1.07929 1.31752 0.83727 0.78060 0.69916 0.78461 1.20437 1.14880 1.20100 1.50878 1.17197 1.23692 1.22160 1.26353 1.00197 0.88728 0.89774 1.70506 1.08177 1.30262 1.21780 1.26591 0.98020 0.90173 0.97562 1.77889 1.05327 1.27283 1.09126 0.91270 0.90384 0.91408 0.93478 0.74652 0.73685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 8.28 71.98 0.60 -4.86 14 2 C 0.25 11.18 2.89 44.25 0.13 11.31 14 3 H 0.05 2.43 6.77 -2.39 -0.02 2.41 14 4 C -0.62 -33.93 9.12 25.60 0.23 -33.70 14 5 H 0.01 0.88 8.06 -2.91 -0.02 0.86 14 6 C 0.00 -0.17 5.33 84.66 0.45 0.28 14 7 N -0.92 -54.95 13.70 21.45 0.29 -54.66 14 8 Si 1.08 45.01 26.17 68.60 1.80 46.80 14 9 H -0.28 -11.50 7.11 99.48 0.71 -10.80 14 10 H -0.23 -7.77 5.53 99.48 0.55 -7.22 14 11 H -0.28 -11.33 7.11 99.48 0.71 -10.63 14 12 N -0.35 -15.24 3.53 -335.00 -1.18 -16.42 14 13 C 0.25 9.32 11.76 180.36 2.12 11.44 14 14 N -0.58 -21.85 11.19 -204.00 -2.28 -24.13 14 15 C 0.18 6.49 13.03 180.77 2.36 8.85 14 16 N -0.37 -15.90 12.70 -61.25 -0.78 -16.68 14 17 H 0.07 2.26 6.92 -2.39 -0.02 2.24 14 18 H 0.08 2.75 5.05 -2.39 -0.01 2.74 14 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 14 20 H 0.26 15.65 8.73 -92.70 -0.81 14.84 14 21 H 0.24 7.10 7.18 -2.91 -0.02 7.08 14 22 H 0.25 6.34 8.06 -2.91 -0.02 6.32 14 Total: -1.00 -66.69 196.35 4.76 -61.93 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.02 Total: 9.84 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.89 Total: -6.68 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.95 Total: -111.89 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.80 Total: 46.80 kcal Total: -66.69 4.76 -61.93 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246950.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.366 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds