Wall clock time and date at job start Mon Mar 30 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36803 * 122.89912 * 2 1 4 4 C 1.34535 * 115.34344 * 179.76095 * 3 2 1 5 5 S 1.75795 * 110.14449 * 0.47990 * 4 3 2 6 6 C 1.38282 * 122.90206 * 180.28316 * 2 1 3 7 7 C 1.39916 * 125.40738 * 0.03911 * 6 2 1 8 8 H 1.07999 * 119.99890 * 353.20783 * 7 6 2 9 9 C 1.40065 * 119.99819 * 173.19793 * 7 6 2 10 10 N 1.30865 * 120.00371 * 6.48192 * 9 7 6 11 11 Si 1.86802 * 119.99751 * 186.47962 * 9 7 6 12 12 H 1.48501 * 109.47048 * 94.98724 * 11 9 7 13 13 H 1.48505 * 109.47282 * 214.98727 * 11 9 7 14 14 H 1.48497 * 109.47460 * 334.99052 * 11 9 7 15 15 H 1.08995 * 109.47400 * 269.71300 * 1 2 3 16 16 H 1.09008 * 109.47019 * 29.71520 * 1 2 3 17 17 H 1.09000 * 109.46995 * 149.70750 * 1 2 3 18 18 H 1.08001 * 122.32672 * 359.97311 * 3 2 1 19 19 H 1.07997 * 124.92789 * 180.20836 * 4 3 2 20 20 H 0.97001 * 120.00302 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2501 1.1486 0.0000 4 6 3.5838 0.9717 0.0051 5 16 3.9670 -0.7439 -0.0035 6 6 2.2582 -1.1610 -0.0057 7 6 1.7411 -2.4611 -0.0129 8 1 0.6785 -2.6201 0.0962 9 6 2.6015 -3.5562 -0.1619 10 7 3.8975 -3.3742 -0.1670 11 14 1.8992 -5.2765 -0.3534 12 1 1.7971 -5.6117 -1.7964 13 1 2.7922 -6.2536 0.3198 14 1 0.5499 -5.3319 0.2642 15 1 -0.3634 -0.0051 1.0276 16 1 -0.3633 0.8926 -0.5094 17 1 -0.3633 -0.8874 -0.5184 18 1 1.7975 2.1292 -0.0004 19 1 4.3131 1.7682 0.0090 20 1 4.4934 -4.1327 -0.2698 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051952497.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:47 Heat of formation + Delta-G solvation = -17.502717 kcal Electronic energy + Delta-G solvation = -7489.903634 eV Core-core repulsion = 5969.383094 eV Total energy + Delta-G solvation = -1520.520540 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 168.030 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.17212 -35.70707 -31.34038 -29.60644 -25.77448 -23.07834 -20.11512 -18.80096 -16.94567 -16.40356 -15.39695 -14.32989 -14.21204 -13.97524 -13.42955 -13.14893 -12.69656 -12.35849 -12.20301 -11.90823 -11.58325 -11.28402 -10.80354 -9.33126 -8.79282 -8.58939 -6.40456 0.81438 1.38391 1.52785 1.55555 1.75362 2.09107 2.26037 2.29234 3.11611 4.65141 4.89800 4.95661 5.00571 5.09031 5.13746 5.46666 5.76355 5.94218 6.20744 6.28821 6.71051 6.72588 8.09534 Molecular weight = 168.03amu Principal moments of inertia in cm(-1) A = 0.064825 B = 0.020265 C = 0.015585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.830636 B = 1381.368894 C = 1796.209818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.360 4.360 3 C -0.074 4.074 4 C -0.427 4.427 5 S 0.085 5.915 6 C 0.009 3.991 7 C -0.416 4.416 8 H 0.101 0.899 9 C 0.011 3.989 10 N -0.809 5.809 11 Si 1.010 2.990 12 H -0.260 1.260 13 H -0.263 1.263 14 H -0.252 1.252 15 H 0.038 0.962 16 H 0.052 0.948 17 H 0.044 0.956 18 H 0.114 0.886 19 H 0.134 0.866 20 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -2.697 -0.382 3.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.367 4.367 3 C -0.103 4.103 4 C -0.561 4.561 5 S 0.345 5.655 6 C -0.111 4.111 7 C -0.451 4.451 8 H 0.119 0.881 9 C -0.206 4.206 10 N -0.436 5.436 11 Si 0.829 3.171 12 H -0.185 1.185 13 H -0.187 1.187 14 H -0.176 1.176 15 H 0.057 0.943 16 H 0.071 0.929 17 H 0.063 0.937 18 H 0.132 0.868 19 H 0.152 0.848 20 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.784 -3.506 -0.393 3.614 hybrid contribution -1.160 0.528 -0.061 1.276 sum -1.944 -2.978 -0.453 3.585 Atomic orbital electron populations 1.19829 0.90598 1.00182 0.99387 1.19040 0.96809 0.91522 1.29343 1.19504 0.92999 0.97630 1.00215 1.25575 0.99188 1.01865 1.29511 1.84280 1.08387 0.96107 1.76761 1.22144 0.94510 0.97013 0.97449 1.19509 0.96567 0.89400 1.39632 0.88140 1.27234 0.94591 1.06915 0.91907 1.68990 1.04892 1.36210 1.33507 0.84732 0.79397 0.73370 0.79647 1.18471 1.18680 1.17564 0.94313 0.92929 0.93737 0.86796 0.84802 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.78 9.82 71.24 0.70 -1.08 14 2 C -0.36 -18.76 5.91 -20.19 -0.12 -18.88 14 3 C -0.07 -3.72 9.93 21.08 0.21 -3.51 14 4 C -0.43 -21.69 11.23 66.97 0.75 -20.94 14 5 S 0.09 4.57 20.30 -56.49 -1.15 3.42 14 6 C 0.01 0.49 6.18 22.69 0.14 0.63 14 7 C -0.42 -21.80 8.82 23.12 0.20 -21.60 14 8 H 0.10 4.97 6.92 -2.91 -0.02 4.95 14 9 C 0.01 0.53 5.49 85.28 0.47 1.00 14 10 N -0.81 -40.31 10.70 21.86 0.23 -40.07 14 11 Si 1.01 35.72 29.57 68.60 2.03 37.75 14 12 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 13 H -0.26 -8.76 7.11 99.48 0.71 -8.05 14 14 H -0.25 -8.61 7.11 99.48 0.71 -7.90 14 15 H 0.04 1.57 8.14 -2.39 -0.02 1.55 14 16 H 0.05 2.00 8.13 -2.38 -0.02 1.98 14 17 H 0.04 1.88 7.11 -2.39 -0.02 1.86 14 18 H 0.11 5.00 8.06 -2.91 -0.02 4.98 14 19 H 0.13 6.14 8.06 -2.91 -0.02 6.11 14 20 H 0.31 13.50 8.30 -92.71 -0.77 12.73 14 Total: -1.00 -57.97 193.99 4.70 -53.27 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.23 Total: 10.00 kcal Atomic # 6 Polarization: -66.73 SS G_CDS: 2.35 Total: -64.37 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.23 Total: -40.07 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.15 Total: 3.42 kcal Total: -57.97 4.70 -53.27 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051952497.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.772 kcal (2) G-P(sol) polarization free energy of solvation -57.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds