Wall clock time and date at job start Mon Mar 30 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31249 * 1 3 3 Si 1.86798 * 120.00499 * 2 1 4 4 H 1.48506 * 109.47096 * 274.98025 * 3 2 1 5 5 H 1.48496 * 109.46967 * 34.97837 * 3 2 1 6 6 H 1.48504 * 109.47161 * 154.97955 * 3 2 1 7 7 C 1.39022 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99681 * 185.88809 * 7 2 1 9 9 N 1.37566 * 119.99610 * 5.88570 * 7 2 1 10 10 N 1.40328 * 126.89111 * 354.16354 * 9 7 2 11 11 N 1.28753 * 108.02961 * 179.72782 * 10 9 7 12 12 C 1.33456 * 109.98979 * 0.44236 * 11 10 9 13 13 C 1.34946 * 109.02142 * 359.54955 * 12 11 10 14 14 C 1.50699 * 126.63135 * 180.29665 * 13 12 11 15 15 N 1.46900 * 109.47270 * 94.97783 * 14 13 12 16 16 H 0.96999 * 119.99357 * 0.02562 * 1 2 3 17 17 H 1.07995 * 125.48539 * 179.81210 * 12 11 10 18 18 H 1.09001 * 109.47508 * 214.97433 * 14 13 12 19 19 H 1.09001 * 109.47345 * 334.97634 * 14 13 12 20 20 H 1.00896 * 111.00040 * 56.04004 * 15 14 13 21 21 H 1.00901 * 111.00562 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6176 0.0000 4 1 2.3889 2.1071 -1.3948 5 1 1.5007 2.6199 0.8026 6 1 3.5929 1.4119 0.5922 7 6 2.0076 -1.2040 -0.0005 8 1 3.0832 -1.2065 0.0954 9 7 1.3250 -2.3921 -0.1232 10 7 -0.0673 -2.5657 -0.1418 11 7 -0.3104 -3.8228 -0.2773 12 6 0.8350 -4.5047 -0.3411 13 6 1.8672 -3.6400 -0.2515 14 6 3.3339 -3.9840 -0.2869 15 7 3.8383 -3.8374 -1.6587 16 1 -0.4849 0.8401 -0.0004 17 1 0.9218 -5.5754 -0.4513 18 1 3.8808 -3.3123 0.3749 19 1 3.4739 -5.0132 0.0437 20 1 3.6618 -2.9089 -2.0117 21 1 4.8205 -4.0630 -1.7090 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062296083.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:36 Heat of formation + Delta-G solvation = 59.713520 kcal Electronic energy + Delta-G solvation = -9435.739573 eV Core-core repulsion = 7540.400012 eV Total energy + Delta-G solvation = -1895.339561 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.03647 -36.16827 -35.56616 -33.05927 -30.59161 -27.65635 -25.73858 -23.00333 -21.40450 -19.44813 -17.48118 -16.77471 -16.22699 -16.05042 -15.11258 -14.78004 -14.28228 -13.69772 -13.21687 -13.11082 -13.01536 -12.08495 -11.83148 -11.52421 -11.23117 -10.64083 -9.61324 -9.31878 -8.70948 -6.64097 1.07111 1.36352 1.56710 1.61878 2.04559 2.24021 2.73570 2.89410 3.96608 4.21216 4.33691 4.45626 4.77504 4.91076 5.00548 5.35703 5.93083 5.96526 6.18737 6.59893 6.71798 7.20263 8.20647 8.30750 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.052334 B = 0.019882 C = 0.014968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.894005 B = 1407.976243 C = 1870.259558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C -0.002 4.002 3 Si 1.027 2.973 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.239 1.239 7 C -0.338 4.338 8 H 0.143 0.857 9 N -0.156 5.156 10 N -0.159 5.159 11 N -0.372 5.372 12 C -0.089 4.089 13 C -0.096 4.096 14 C 0.164 3.836 15 N -0.847 5.847 16 H 0.287 0.713 17 H 0.181 0.819 18 H 0.036 0.964 19 H 0.106 0.894 20 H 0.339 0.661 21 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 0.798 -0.217 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.217 4.217 3 Si 0.844 3.156 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.162 1.162 7 C -0.474 4.474 8 H 0.160 0.840 9 N 0.070 4.930 10 N -0.134 5.134 11 N -0.229 5.229 12 C -0.257 4.257 13 C -0.230 4.230 14 C 0.032 3.968 15 N -0.379 5.379 16 H 0.098 0.902 17 H 0.198 0.802 18 H 0.054 0.946 19 H 0.124 0.876 20 H 0.150 0.850 21 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.469 0.970 -0.315 8.530 hybrid contribution 1.349 0.845 0.375 1.635 sum 9.818 1.815 0.060 9.984 Atomic orbital electron populations 1.70318 1.08887 1.30532 1.33855 1.27125 0.96476 1.04904 0.93220 0.84467 0.78539 0.73161 0.79407 1.18606 1.19677 1.16201 1.20842 0.93812 0.80966 1.51794 0.83961 1.47037 1.06412 1.05999 1.33520 1.82466 0.90465 1.08225 1.32294 1.74003 1.27462 1.01452 1.19951 1.22757 0.87774 1.00979 1.14215 1.21921 0.98210 0.85076 1.17841 1.19845 0.85376 1.01628 0.89964 1.58669 1.23063 1.34617 1.21558 0.90244 0.80154 0.94588 0.87577 0.84961 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.06 11.91 21.66 0.26 -44.80 14 2 C 0.00 -0.11 5.50 84.97 0.47 0.36 14 3 Si 1.03 35.78 29.55 68.60 2.03 37.81 14 4 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 5 H -0.27 -9.37 7.11 99.48 0.71 -8.66 14 6 H -0.24 -7.40 7.11 99.48 0.71 -6.70 14 7 C -0.34 -17.12 10.06 83.98 0.84 -16.27 14 8 H 0.14 6.18 7.31 -2.91 -0.02 6.16 14 9 N -0.16 -8.66 3.78 -178.50 -0.67 -9.33 14 10 N -0.16 -9.95 11.75 37.02 0.44 -9.51 14 11 N -0.37 -21.83 12.33 -58.68 -0.72 -22.55 14 12 C -0.09 -4.43 11.78 83.69 0.99 -3.44 14 13 C -0.10 -4.54 6.49 41.05 0.27 -4.28 14 14 C 0.16 5.64 6.96 85.56 0.60 6.23 14 15 N -0.85 -25.98 9.61 -190.00 -1.83 -27.80 14 16 H 0.29 14.48 8.31 -92.71 -0.77 13.71 14 17 H 0.18 7.39 8.06 -2.91 -0.02 7.37 14 18 H 0.04 1.18 7.68 -2.39 -0.02 1.16 14 19 H 0.11 3.07 8.14 -2.39 -0.02 3.05 14 20 H 0.34 11.26 8.98 -89.70 -0.81 10.45 14 21 H 0.36 7.97 9.08 -89.69 -0.81 7.16 14 Total: -1.00 -70.30 198.61 2.31 -68.00 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.35 Total: 25.59 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 3.16 Total: -17.40 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -2.53 Total: -114.00 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -70.30 2.31 -68.00 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062296083.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.712 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds