Wall clock time and date at job start Mon Mar 30 2020 02:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47016 * 2 1 4 4 N 1.28664 * 125.21927 * 270.02115 * 3 2 1 5 5 N 1.28959 * 109.24679 * 179.97438 * 4 3 2 6 6 C 1.34865 * 107.18483 * 0.02562 * 5 4 3 7 7 C 1.41658 * 126.82855 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99882 * 179.97438 * 7 6 5 9 9 C 1.39855 * 119.99987 * 359.97438 * 7 6 5 10 10 N 1.30860 * 120.00238 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99816 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47085 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46802 * 120.00379 * 11 9 7 14 14 H 1.48498 * 109.47072 * 239.99968 * 11 9 7 15 15 N 1.28864 * 125.21065 * 90.00312 * 3 2 1 16 16 H 1.08998 * 109.47101 * 59.99991 * 1 2 3 17 17 H 1.09002 * 109.46947 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.46780 * 299.99808 * 1 2 3 19 19 H 1.09005 * 109.46952 * 239.99984 * 2 1 3 20 20 H 1.08994 * 109.47081 * 120.00503 * 2 1 3 21 21 H 0.96998 * 120.00040 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2653 2.0809 -1.0511 5 7 2.6782 3.2499 -0.6963 6 6 2.6884 3.2766 0.6521 7 6 3.0716 4.3626 1.4770 8 1 3.0366 4.2628 2.5518 9 6 3.4953 5.5638 0.8996 10 7 3.5372 5.6849 -0.4027 11 14 4.0000 6.9961 1.9875 12 1 3.8630 6.6065 3.4139 13 1 5.4129 7.3569 1.7069 14 1 3.1259 8.1632 1.7065 15 7 2.2661 2.0817 1.0529 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3632 0.5138 0.8899 19 1 1.8934 -0.5139 -0.8900 20 1 1.8934 -0.5139 0.8899 21 1 3.8314 6.5179 -0.8031 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075525490.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:07 Heat of formation + Delta-G solvation = 86.442628 kcal Electronic energy + Delta-G solvation = -9303.889103 eV Core-core repulsion = 7409.708603 eV Total energy + Delta-G solvation = -1894.180500 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.00953 -36.44324 -35.12380 -33.17964 -31.60711 -28.34966 -25.41267 -23.47676 -22.22578 -19.54578 -17.70492 -17.13038 -16.90238 -15.43475 -14.94147 -14.17579 -13.84036 -13.30802 -13.18477 -12.89766 -12.78271 -12.33470 -11.95980 -11.73613 -11.48101 -11.10509 -10.90722 -10.29511 -8.52166 -6.66826 0.95232 1.42552 1.44664 1.63248 1.89982 2.11378 2.28996 3.30862 3.77942 4.03752 4.30407 4.49021 4.54580 4.74797 4.94773 5.15896 5.29471 5.76571 6.09147 6.22779 6.60154 6.82954 8.38542 8.51149 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.119422 B = 0.013018 C = 0.012205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 234.405765 B = 2150.375457 C = 2293.639145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.119 3.881 3 N -0.160 5.160 4 N -0.128 5.128 5 N -0.332 5.332 6 C 0.272 3.728 7 C -0.470 4.470 8 H 0.094 0.906 9 C 0.030 3.970 10 N -0.807 5.807 11 Si 1.009 2.991 12 H -0.253 1.253 13 H -0.263 1.263 14 H -0.264 1.264 15 N -0.440 5.440 16 H 0.049 0.951 17 H 0.125 0.875 18 H 0.046 0.954 19 H 0.125 0.875 20 H 0.118 0.882 21 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -5.757 2.346 6.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 N -0.075 5.075 4 N -0.122 5.122 5 N -0.207 5.207 6 C 0.012 3.988 7 C -0.513 4.513 8 H 0.113 0.887 9 C -0.189 4.189 10 N -0.434 5.434 11 Si 0.828 3.172 12 H -0.176 1.176 13 H -0.188 1.188 14 H -0.188 1.188 15 N -0.298 5.298 16 H 0.069 0.931 17 H 0.143 0.857 18 H 0.066 0.934 19 H 0.143 0.857 20 H 0.136 0.864 21 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.894 -6.095 1.557 6.924 hybrid contribution 0.266 0.775 0.587 1.008 sum -2.628 -5.319 2.144 6.309 Atomic orbital electron populations 1.22102 0.92160 1.05315 1.01876 1.22361 0.97002 0.73786 1.06887 1.50061 1.42052 1.14473 1.00870 1.78307 1.15859 1.01035 1.16984 1.76557 1.22935 1.08414 1.12828 1.22662 0.95281 0.91889 0.88945 1.18750 1.44060 0.94691 0.93757 0.88750 1.26962 0.92717 1.02286 0.96921 1.70084 1.33267 1.27401 1.12625 0.84778 0.78495 0.75494 0.78477 1.17591 1.18805 1.18835 1.75187 1.33591 1.07017 1.14036 0.93136 0.85684 0.93446 0.85722 0.86395 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.24 71.98 0.74 -3.19 14 2 C 0.12 3.58 7.31 86.38 0.63 4.21 14 3 N -0.16 -7.60 3.99 -187.49 -0.75 -8.35 14 4 N -0.13 -6.91 13.21 37.02 0.49 -6.42 14 5 N -0.33 -20.63 10.82 -56.01 -0.61 -21.23 14 6 C 0.27 16.68 7.80 134.90 1.05 17.73 14 7 C -0.47 -27.60 9.51 23.51 0.22 -27.38 14 8 H 0.09 5.24 7.84 -2.91 -0.02 5.21 14 9 C 0.03 1.61 5.49 85.23 0.47 2.08 14 10 N -0.81 -46.48 11.98 21.81 0.26 -46.22 14 11 Si 1.01 39.96 29.56 68.60 2.03 41.98 14 12 H -0.25 -9.55 7.11 99.48 0.71 -8.84 14 13 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 14 15 N -0.44 -24.21 12.22 -55.99 -0.68 -24.89 14 16 H 0.05 1.41 8.14 -2.39 -0.02 1.39 14 17 H 0.12 1.92 8.14 -2.39 -0.02 1.90 14 18 H 0.05 1.37 8.14 -2.39 -0.02 1.35 14 19 H 0.12 3.03 8.14 -2.38 -0.02 3.01 14 20 H 0.12 3.04 8.14 -2.39 -0.02 3.02 14 21 H 0.29 14.70 8.30 -92.71 -0.77 13.93 14 Total: -1.00 -74.22 200.30 5.08 -69.13 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.23 Total: 2.55 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.11 Total: -6.55 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -1.29 Total: -107.12 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Total: -74.22 5.08 -69.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075525490.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.576 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds