Wall clock time and date at job start Mon Mar 30 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39103 * 126.24673 * 2 1 4 4 O 1.35960 * 125.51912 * 359.97438 * 3 2 1 5 5 N 1.31568 * 108.96265 * 180.02562 * 3 2 1 6 6 N 1.40023 * 109.07581 * 359.97438 * 5 3 2 7 7 H 0.96995 * 126.15443 * 180.26295 * 6 5 3 8 8 C 1.37505 * 107.68355 * 0.02562 * 6 5 3 9 9 C 1.40223 * 126.61435 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99844 * 179.97438 * 9 8 6 11 11 C 1.40155 * 119.99910 * 359.97438 * 9 8 6 12 12 N 1.30769 * 119.99784 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99779 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47157 * 60.00033 * 13 11 9 15 15 H 1.48507 * 109.46915 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47245 * 300.00006 * 13 11 9 17 17 H 1.09006 * 109.46615 * 270.00045 * 1 2 3 18 18 H 1.08998 * 109.46940 * 29.99367 * 1 2 3 19 19 H 1.08997 * 109.47606 * 150.00258 * 1 2 3 20 20 H 0.96700 * 114.00053 * 90.00342 * 4 3 2 21 21 H 0.97006 * 119.99459 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1218 0.0000 4 8 1.9041 2.4132 -0.0005 5 7 3.5858 0.7309 -0.0006 6 7 3.6295 -0.6686 -0.0004 7 1 4.4302 -1.2161 0.0029 8 6 2.3332 -1.1271 -0.0002 9 6 1.9199 -2.4670 0.0005 10 1 0.8670 -2.7074 0.0009 11 6 2.8733 -3.4943 0.0006 12 7 4.1482 -3.2032 -0.0004 13 14 2.3228 -5.2794 0.0023 14 1 1.5072 -5.5470 -1.2094 15 1 3.5149 -6.1650 0.0016 16 1 1.5088 -5.5452 1.2155 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8900 -0.5137 19 1 -0.3634 -0.8900 -0.5138 20 1 1.7807 2.7870 0.8828 21 1 4.8080 -3.9143 -0.0007 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082410827.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:45 Heat of formation + Delta-G solvation = 3.154630 kcal Electronic energy + Delta-G solvation = -9366.611306 eV Core-core repulsion = 7436.526417 eV Total energy + Delta-G solvation = -1930.084890 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.15246 -36.00627 -33.66304 -30.83032 -28.94235 -26.43835 -24.05631 -20.54983 -19.15949 -17.33369 -16.07102 -15.25829 -14.70895 -13.85198 -13.18019 -12.50816 -12.00315 -11.71978 -11.55363 -11.26836 -11.08929 -10.83682 -10.62784 -10.06162 -9.60936 -8.56778 -7.81209 -7.12212 -6.97296 -4.67947 2.83992 2.96260 2.99961 3.52689 3.76434 3.87785 4.56542 5.12805 5.62010 6.43803 6.74410 6.82457 6.93347 7.10188 7.27020 7.49620 7.64695 8.02066 8.29944 8.58363 8.88442 9.33772 9.62604 9.95879 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.082274 B = 0.015795 C = 0.013363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.243353 B = 1772.320907 C = 2094.868911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.396 4.396 3 C 0.253 3.747 4 O -0.479 6.479 5 N -0.399 5.399 6 N -0.475 5.475 7 H 0.443 0.557 8 C 0.280 3.720 9 C -0.439 4.439 10 H 0.098 0.902 11 C 0.070 3.930 12 N -0.836 5.836 13 Si 0.937 3.063 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.262 1.262 17 H 0.028 0.972 18 H 0.037 0.963 19 H 0.043 0.957 20 H 0.377 0.623 21 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -1.679 1.576 3.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.409 4.409 3 C 0.051 3.949 4 O -0.280 6.280 5 N -0.235 5.235 6 N -0.200 5.200 7 H 0.298 0.702 8 C 0.154 3.846 9 C -0.476 4.476 10 H 0.116 0.884 11 C -0.145 4.145 12 N -0.468 5.468 13 Si 0.761 3.239 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.187 1.187 17 H 0.047 0.953 18 H 0.056 0.944 19 H 0.062 0.938 20 H 0.229 0.771 21 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.652 -1.313 0.946 2.313 hybrid contribution -0.523 -1.175 0.513 1.384 sum -2.176 -2.488 1.458 3.612 Atomic orbital electron populations 1.19498 0.91667 0.99476 0.98447 1.19876 0.95241 0.91009 1.34822 1.19313 0.90365 0.83231 1.01948 1.84752 1.87293 1.23875 1.32122 1.76800 1.19049 0.92957 1.34655 1.46914 1.08038 1.01625 1.63391 0.70244 1.18410 0.83171 0.92893 0.90079 1.18967 0.95301 0.87993 1.45300 0.88435 1.26097 0.94045 1.03143 0.91248 1.68758 1.01946 1.36698 1.39354 0.85871 0.78931 0.78975 0.80133 1.18654 1.20222 1.18653 0.95307 0.94401 0.93754 0.77066 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.72 10.14 36.01 0.37 -0.35 14 2 C -0.40 -10.35 6.23 -103.74 -0.65 -10.99 14 3 C 0.25 6.60 8.33 -17.34 -0.14 6.45 14 4 O -0.48 -10.56 13.64 -19.62 -0.27 -10.83 14 5 N -0.40 -11.02 12.67 30.39 0.39 -10.63 14 6 N -0.48 -13.14 7.10 32.42 0.23 -12.91 14 7 H 0.44 11.89 6.35 -182.66 -1.16 10.73 14 8 C 0.28 7.69 6.77 -84.01 -0.57 7.13 14 9 C -0.44 -11.33 9.09 -38.12 -0.35 -11.68 14 10 H 0.10 2.36 7.32 -52.49 -0.38 1.98 14 11 C 0.07 1.68 5.50 -17.28 -0.10 1.58 14 12 N -0.84 -20.38 10.73 55.56 0.60 -19.78 14 13 Si 0.94 17.84 29.56 -169.99 -5.03 12.82 14 14 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 15 H -0.28 -5.14 7.11 56.52 0.40 -4.74 14 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 17 H 0.03 0.57 8.14 -51.93 -0.42 0.15 14 18 H 0.04 0.77 8.14 -51.93 -0.42 0.34 14 19 H 0.04 0.93 7.57 -51.93 -0.39 0.54 14 20 H 0.38 6.19 9.06 45.56 0.41 6.60 14 21 H 0.29 6.44 8.30 -40.82 -0.34 6.10 14 LS Contribution 195.95 15.07 2.95 2.95 Total: -1.00 -29.53 195.95 -4.07 -33.60 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -1.50 Total: 12.64 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.44 Total: -7.86 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 1.21 Total: -43.32 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.27 Total: -10.83 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -29.53 -4.07 -33.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082410827.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.752 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds