Wall clock time and date at job start Mon Mar 30 2020 02:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39180 * 124.28277 * 2 1 4 4 C 1.31430 * 112.35002 * 179.97438 * 3 2 1 5 5 C 1.39104 * 126.64506 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99910 * 174.24888 * 5 4 3 7 7 C 1.40588 * 120.00208 * 354.24347 * 5 4 3 8 8 N 1.30550 * 119.99554 * 6.03413 * 7 5 4 9 9 Si 1.86795 * 119.99901 * 186.02798 * 7 5 4 10 10 H 1.48504 * 109.47096 * 94.98783 * 9 7 5 11 11 H 1.48502 * 109.47020 * 214.98644 * 9 7 5 12 12 H 1.48502 * 109.47430 * 334.98349 * 9 7 5 13 13 C 1.51450 * 106.70451 * 0.02562 * 4 3 2 14 14 C 1.35115 * 124.24421 * 179.90519 * 2 1 3 15 15 O 1.21288 * 127.31030 * 0.02562 * 14 2 1 16 16 H 1.09000 * 109.47434 * 359.97173 * 1 2 3 17 17 H 1.09000 * 109.47188 * 119.97230 * 1 2 3 18 18 H 1.09009 * 109.46812 * 239.97032 * 1 2 3 19 19 H 0.97003 * 119.99779 * 179.97438 * 8 7 5 20 20 H 1.09001 * 110.56042 * 118.57766 * 13 4 3 21 21 H 1.09004 * 110.56035 * 241.27115 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2490 1.1500 0.0000 4 6 3.5349 0.8782 0.0005 5 6 4.5779 1.7986 0.0012 6 1 5.5985 1.4580 0.0953 7 6 4.3037 3.1720 -0.1208 8 7 3.0682 3.5938 -0.1161 9 14 5.7070 4.3933 -0.2894 10 1 5.9481 4.6749 -1.7274 11 1 5.3521 5.6546 0.4094 12 1 6.9365 3.8212 0.3159 13 6 3.6608 -0.6310 0.0003 14 6 2.2253 -1.1169 0.0018 15 8 1.8416 -2.2675 0.0033 16 1 -0.3634 1.0276 0.0005 17 1 -0.3633 -0.5134 -0.8902 18 1 -0.3633 -0.5143 0.8898 19 1 2.8790 4.5415 -0.1999 20 1 4.1796 -0.9717 -0.8957 21 1 4.1811 -0.9718 0.8955 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082410833.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:46 Heat of formation + Delta-G solvation = -16.524406 kcal Electronic energy + Delta-G solvation = -9327.082150 eV Core-core repulsion = 7396.143914 eV Total energy + Delta-G solvation = -1930.938237 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.12664 -37.82985 -35.59699 -33.46061 -29.34887 -29.00035 -26.31316 -22.00241 -21.09561 -18.50471 -17.42702 -16.89857 -16.53751 -15.58818 -15.11088 -14.49111 -14.38882 -13.65052 -13.37597 -12.97652 -12.89552 -12.55823 -11.92521 -11.87192 -11.19553 -10.99978 -9.96400 -9.29129 -8.50960 -6.62666 1.19029 1.51064 1.56842 1.66070 2.20415 2.27683 2.34015 3.29069 3.59145 3.99146 4.38717 4.53232 4.62196 4.69092 4.73631 5.17115 5.49348 5.75733 6.28474 6.67232 6.86162 7.26685 8.03317 8.42609 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.091528 B = 0.014590 C = 0.012712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.845038 B = 1918.680355 C = 2202.140303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.475 5.475 3 N -0.394 5.394 4 C 0.170 3.830 5 C -0.440 4.440 6 H 0.112 0.888 7 C 0.025 3.975 8 N -0.775 5.775 9 Si 0.999 3.001 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.247 1.247 13 C -0.157 4.157 14 C 0.455 3.545 15 O -0.595 6.595 16 H 0.084 0.916 17 H 0.062 0.938 18 H 0.063 0.937 19 H 0.286 0.714 20 H 0.123 0.877 21 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 1.710 -0.260 3.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.288 5.288 3 N -0.220 5.220 4 C 0.009 3.991 5 C -0.479 4.479 6 H 0.130 0.870 7 C -0.197 4.197 8 N -0.401 5.401 9 Si 0.819 3.181 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.170 1.170 13 C -0.198 4.198 14 C 0.242 3.758 15 O -0.479 6.479 16 H 0.103 0.897 17 H 0.081 0.919 18 H 0.082 0.918 19 H 0.097 0.903 20 H 0.141 0.859 21 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.766 1.895 -0.259 2.603 hybrid contribution 0.572 -0.258 -0.076 0.632 sum 2.338 1.637 -0.336 2.874 Atomic orbital electron populations 1.21385 0.76479 1.03229 1.01352 1.50280 1.07551 1.04957 1.66014 1.77508 1.03218 1.00698 1.40577 1.21855 0.92737 0.90937 0.93523 1.19048 0.93719 0.90493 1.44649 0.86986 1.27120 0.99226 1.01133 0.92207 1.69932 1.22374 1.17499 1.30290 0.84921 0.77731 0.76260 0.79175 1.19051 1.19906 1.16973 1.21829 0.94950 0.97118 1.05923 1.21980 0.90843 0.85106 0.77829 1.90548 1.81053 1.19766 1.56514 0.89678 0.91913 0.91844 0.90288 0.85884 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.77 11.21 127.77 1.43 6.20 14 2 N -0.47 -23.84 3.94 -483.04 -1.91 -25.74 14 3 N -0.39 -21.68 10.43 -46.97 -0.49 -22.17 14 4 C 0.17 8.77 6.99 43.07 0.30 9.07 14 5 C -0.44 -21.37 9.38 23.05 0.22 -21.16 14 6 H 0.11 4.79 7.86 -2.91 -0.02 4.77 14 7 C 0.03 1.19 5.50 85.46 0.47 1.66 14 8 N -0.78 -39.92 11.96 21.94 0.26 -39.65 14 9 Si 1.00 34.68 29.57 68.60 2.03 36.71 14 10 H -0.27 -9.02 7.11 99.48 0.71 -8.31 14 11 H -0.27 -9.33 7.11 99.48 0.71 -8.62 14 12 H -0.25 -7.96 7.11 99.48 0.71 -7.26 14 13 C -0.16 -7.01 6.86 29.61 0.20 -6.81 14 14 C 0.45 22.67 8.40 87.88 0.74 23.41 14 15 O -0.59 -31.31 17.87 -3.05 -0.05 -31.37 14 16 H 0.08 3.29 8.14 -2.39 -0.02 3.27 14 17 H 0.06 2.32 8.14 -2.39 -0.02 2.30 14 18 H 0.06 2.34 8.14 -2.38 -0.02 2.32 14 19 H 0.29 13.29 8.29 -92.71 -0.77 12.53 14 20 H 0.12 4.94 8.14 -2.39 -0.02 4.92 14 21 H 0.12 4.91 8.14 -2.39 -0.02 4.89 14 Total: -1.00 -63.48 200.30 4.43 -59.04 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.23 Total: 10.81 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 3.36 Total: 12.37 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -2.13 Total: -87.56 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.05 Total: -31.37 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -63.48 4.43 -59.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082410833.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.518 kcal (2) G-P(sol) polarization free energy of solvation -63.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds