Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.64479 * 35.42652 * 10 9 7 12 12 C 1.53022 * 109.64821 * 274.99963 * 10 9 7 13 13 C 1.50067 * 110.14742 * 190.88039 * 12 10 9 14 14 C 1.29440 * 124.07908 * 17.13389 * 13 12 10 15 15 C 1.50065 * 124.07286 * 359.51181 * 14 13 12 16 16 C 1.53038 * 110.14335 * 17.16226 * 15 14 13 17 17 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 18 18 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 19 19 H 1.08996 * 109.36085 * 311.09124 * 12 10 9 20 20 H 1.09004 * 109.35379 * 70.81576 * 12 10 9 21 21 H 1.08009 * 117.95908 * 197.11149 * 13 12 10 22 22 H 1.07998 * 117.96446 * 179.53092 * 14 13 12 23 23 H 1.08993 * 109.35961 * 137.35991 * 15 14 13 24 24 H 1.09010 * 109.35673 * 256.94368 * 15 14 13 25 25 H 1.08996 * 109.63709 * 190.86654 * 16 15 14 26 26 H 1.08994 * 109.65620 * 70.22361 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9657 -3.5558 0.5956 12 6 2.4241 -4.0395 -1.4351 13 6 2.9347 -5.4499 -1.4798 14 6 2.7542 -6.3169 -0.5357 15 6 2.0181 -6.0297 0.7400 16 6 1.1723 -4.7635 0.5869 17 1 -0.4850 0.8401 -0.0004 18 1 0.3556 -2.3881 0.0042 19 1 1.5408 -3.9548 -2.0680 20 1 3.1979 -3.3654 -1.8026 21 1 3.4870 -5.7611 -2.3543 22 1 3.1588 -7.3085 -0.6747 23 1 1.3683 -6.8713 0.9795 24 1 2.7364 -5.8891 1.5479 25 1 0.7965 -4.4539 1.5620 26 1 0.3374 -4.9594 -0.0858 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084067383.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = 11.816339 kcal Electronic energy + Delta-G solvation = -9391.471783 eV Core-core repulsion = 7663.021499 eV Total energy + Delta-G solvation = -1728.450284 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.99967 -33.94183 -31.16329 -30.22926 -27.86324 -23.77195 -22.37818 -20.65380 -17.60181 -16.68781 -15.75976 -14.51101 -13.78969 -13.45932 -12.87783 -12.61131 -12.45337 -11.88999 -11.69902 -11.01661 -10.84775 -10.34760 -10.20027 -10.04375 -9.73973 -9.51437 -8.85904 -8.53470 -6.91188 -5.72829 -3.01232 2.69497 3.45943 3.50948 3.52742 4.62411 5.19197 5.31487 5.50618 5.60886 5.77912 5.85757 6.02128 6.16488 6.26489 6.34260 6.45854 6.57706 6.62795 6.92592 7.11306 7.18460 7.39815 7.74261 8.46347 9.57085 10.16175 10.51295 11.50115 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.090157 B = 0.011914 C = 0.011270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.495542 B = 2349.638319 C = 2483.781446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.112 4.112 13 C -0.140 4.140 14 C -0.174 4.174 15 C -0.083 4.083 16 C -0.126 4.126 17 H 0.255 0.745 18 H 0.384 0.616 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -9.740 -0.399 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.192 4.192 15 C -0.121 4.121 16 C -0.164 4.164 17 H 0.064 0.936 18 H 0.217 0.783 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.092 -9.580 -0.377 10.424 hybrid contribution 0.224 0.870 -0.196 0.920 sum 4.317 -8.710 -0.573 9.738 Atomic orbital electron populations 1.69665 1.05116 1.25582 1.57977 1.24742 0.95511 0.97666 1.03198 0.86198 0.78656 0.83917 0.77497 1.21761 1.21800 1.20776 1.19277 0.91013 0.84202 1.42323 0.91205 1.42453 1.05794 0.99847 1.88498 1.20247 0.94392 0.85907 0.92594 0.93466 1.21272 1.00676 0.91949 1.01338 1.22270 0.99216 0.96438 0.97966 1.21957 1.01984 0.98599 0.96650 1.20380 0.98139 0.97837 0.95731 1.21886 0.98423 0.94774 1.01306 0.93558 0.78288 0.91190 0.91623 0.89083 0.88920 0.91930 0.91406 0.91659 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 15 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 15 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 15 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 15 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 7 C -0.24 -6.73 9.94 -15.06 -0.15 -6.88 15 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 15 9 N -0.73 -18.81 5.14 -53.21 -0.27 -19.08 15 10 C 0.18 3.75 2.83 -67.72 -0.19 3.56 15 11 H 0.05 1.03 8.07 -51.93 -0.42 0.61 15 12 C -0.11 -2.15 5.71 -28.18 -0.16 -2.31 15 13 C -0.14 -2.22 9.80 -35.90 -0.35 -2.58 15 14 C -0.17 -2.54 9.80 -35.90 -0.35 -2.89 15 15 C -0.08 -1.22 6.12 -28.17 -0.17 -1.39 15 16 C -0.13 -2.22 5.49 -26.50 -0.15 -2.37 15 17 H 0.25 7.55 8.31 -40.82 -0.34 7.21 15 18 H 0.38 10.50 7.79 -40.82 -0.32 10.18 15 19 H 0.07 1.40 8.14 -51.93 -0.42 0.97 15 20 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 21 H 0.09 1.27 8.06 -52.48 -0.42 0.85 15 22 H 0.09 1.15 8.06 -52.49 -0.42 0.73 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.07 0.95 8.14 -51.92 -0.42 0.53 15 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.06 1.04 8.12 -51.93 -0.42 0.62 15 LS Contribution 221.21 15.07 3.33 3.33 Total: -1.00 -29.97 221.21 -6.52 -36.49 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.66 Total: 4.99 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.62 Total: -15.41 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.45 Total: -47.08 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.97 -6.52 -36.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084067383.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.310 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds