Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99612 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.64479 * 35.42652 * 10 9 7 12 12 C 1.53022 * 109.64821 * 274.99963 * 10 9 7 13 13 C 1.50067 * 110.14742 * 190.88039 * 12 10 9 14 14 C 1.29440 * 124.07908 * 17.13389 * 13 12 10 15 15 C 1.50065 * 124.07286 * 359.51181 * 14 13 12 16 16 C 1.53038 * 110.14335 * 17.16226 * 15 14 13 17 17 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 18 18 H 0.96995 * 120.00043 * 359.72565 * 9 7 2 19 19 H 1.08996 * 109.36085 * 311.09124 * 12 10 9 20 20 H 1.09004 * 109.35379 * 70.81576 * 12 10 9 21 21 H 1.08009 * 117.95908 * 197.11149 * 13 12 10 22 22 H 1.07998 * 117.96446 * 179.53092 * 14 13 12 23 23 H 1.08993 * 109.35961 * 137.35991 * 15 14 13 24 24 H 1.09010 * 109.35673 * 256.94368 * 15 14 13 25 25 H 1.08996 * 109.63709 * 190.86654 * 16 15 14 26 26 H 1.08994 * 109.65620 * 70.22361 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9657 -3.5558 0.5956 12 6 2.4241 -4.0395 -1.4351 13 6 2.9347 -5.4499 -1.4798 14 6 2.7542 -6.3169 -0.5357 15 6 2.0181 -6.0297 0.7400 16 6 1.1723 -4.7635 0.5869 17 1 -0.4850 0.8401 -0.0004 18 1 0.3556 -2.3881 0.0042 19 1 1.5408 -3.9548 -2.0680 20 1 3.1979 -3.3654 -1.8026 21 1 3.4870 -5.7611 -2.3543 22 1 3.1588 -7.3085 -0.6747 23 1 1.3683 -6.8713 0.9795 24 1 2.7364 -5.8891 1.5479 25 1 0.7965 -4.4539 1.5620 26 1 0.3374 -4.9594 -0.0858 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084067383.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = -7.014873 kcal Electronic energy + Delta-G solvation = -9392.288366 eV Core-core repulsion = 7663.021499 eV Total energy + Delta-G solvation = -1729.266867 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.46851 -35.84407 -33.09204 -31.58035 -29.63733 -25.78181 -23.80371 -22.28719 -19.43465 -18.34658 -17.24848 -16.34135 -15.40685 -15.37672 -14.33764 -14.17123 -14.11080 -13.28998 -13.15248 -12.92257 -12.82402 -12.17726 -12.01677 -11.76779 -11.38481 -11.21918 -10.83558 -9.79223 -9.01649 -7.95211 -5.24170 1.46299 1.48243 1.50247 1.56905 2.55722 3.37662 3.80197 4.02910 4.07649 4.33374 4.53180 4.60716 4.69257 4.77137 4.91589 5.08447 5.14209 5.21054 5.42037 5.47593 5.59769 5.87107 6.15636 6.27718 7.32737 8.09209 8.33323 9.28624 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.090157 B = 0.011914 C = 0.011270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.495542 B = 2349.638319 C = 2483.781446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.740 5.740 10 C 0.170 3.830 11 H 0.038 0.962 12 C -0.104 4.104 13 C -0.161 4.161 14 C -0.157 4.157 15 C -0.083 4.083 16 C -0.120 4.120 17 H 0.251 0.749 18 H 0.372 0.628 19 H 0.053 0.947 20 H 0.049 0.951 21 H 0.114 0.886 22 H 0.128 0.872 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -11.134 -0.248 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.379 5.379 10 C 0.062 3.938 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.179 4.179 14 C -0.175 4.175 15 C -0.120 4.120 16 C -0.158 4.158 17 H 0.060 0.940 18 H 0.204 0.796 19 H 0.072 0.928 20 H 0.067 0.933 21 H 0.132 0.868 22 H 0.146 0.854 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.303 -11.016 -0.228 12.228 hybrid contribution -0.136 1.220 -0.214 1.246 sum 5.167 -9.796 -0.442 11.084 Atomic orbital electron populations 1.69824 1.06660 1.26078 1.59716 1.25582 0.96412 1.01138 1.03826 0.85130 0.77709 0.79422 0.77466 1.21377 1.22045 1.19423 1.19643 0.91367 0.85385 1.40927 0.90883 1.42670 1.05430 1.01097 1.88694 1.20499 0.94255 0.85119 0.93945 0.94358 1.21027 0.99656 0.94446 0.99254 1.22168 1.01177 0.94557 1.00034 1.22264 1.00083 0.99645 0.95488 1.20443 0.98386 0.96813 0.96341 1.21811 0.98318 0.95268 1.00440 0.93991 0.79629 0.92841 0.93278 0.86841 0.85424 0.88992 0.90375 0.92399 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.92 13.06 21.65 0.28 -60.63 15 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 15 3 Si 0.97 47.05 29.55 68.60 2.03 49.08 15 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 15 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 15 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.24 -13.89 9.94 84.03 0.83 -13.05 15 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 15 9 N -0.74 -39.11 5.14 -322.27 -1.66 -40.77 15 10 C 0.17 7.14 2.83 45.13 0.13 7.27 15 11 H 0.04 1.66 8.07 -2.39 -0.02 1.64 15 12 C -0.10 -3.97 5.71 29.66 0.17 -3.80 15 13 C -0.16 -4.72 9.80 27.04 0.27 -4.45 15 14 C -0.16 -3.98 9.80 27.04 0.27 -3.71 15 15 C -0.08 -2.13 6.12 29.66 0.18 -1.95 15 16 C -0.12 -4.12 5.49 30.74 0.17 -3.95 15 17 H 0.25 15.20 8.31 -92.70 -0.77 14.43 15 18 H 0.37 21.00 7.79 -92.71 -0.72 20.28 15 19 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 20 H 0.05 1.97 8.14 -2.38 -0.02 1.95 15 21 H 0.11 2.84 8.06 -2.91 -0.02 2.81 15 22 H 0.13 2.46 8.06 -2.91 -0.02 2.44 15 23 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.08 1.92 8.14 -2.38 -0.02 1.90 15 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 26 H 0.06 1.95 8.12 -2.39 -0.02 1.93 15 Total: -1.00 -64.11 221.21 3.55 -60.56 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.42 Total: 19.52 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 2.48 Total: -27.76 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -1.37 Total: -101.40 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -64.11 3.55 -60.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084067383.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.545 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds