Wall clock time and date at job start Mon Mar 30 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 11 11 O 1.42895 * 109.47614 * 59.99700 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.41374 * 126.58025 * 99.70775 * 12 9 7 14 14 C 1.34514 * 106.84131 * 179.83709 * 13 12 9 15 15 O 1.34300 * 108.42062 * 0.43001 * 14 13 12 16 16 C 1.34311 * 109.47235 * 359.72384 * 15 14 13 17 17 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 18 18 H 0.96696 * 113.99976 * 59.99312 * 11 9 7 19 19 H 1.08001 * 126.58291 * 359.97438 * 13 12 9 20 20 H 1.08002 * 125.79319 * 180.11524 * 14 13 12 21 21 H 1.08004 * 125.78804 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 8 0.4299 -2.5752 -1.1664 12 6 2.2304 -3.6446 0.0005 13 6 2.6324 -4.4094 1.1195 14 6 3.5107 -5.3243 0.6711 15 8 3.6682 -5.1490 -0.6510 16 6 2.8942 -4.1316 -1.0631 17 1 -0.4850 -0.8401 -0.0004 18 1 0.9223 -2.5299 -1.9974 19 1 2.2970 -4.2846 2.1385 20 1 4.0089 -6.0698 1.2731 21 1 2.8181 -3.7663 -2.0767 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878729.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:28 Heat of formation + Delta-G solvation = -69.988416 kcal Electronic energy + Delta-G solvation = -9360.487310 eV Core-core repulsion = 7394.937948 eV Total energy + Delta-G solvation = -1965.549361 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.057 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.37206 -38.19251 -34.34960 -33.87339 -30.54556 -28.28636 -25.04201 -22.40633 -21.31277 -19.41424 -18.86320 -16.80798 -16.58516 -15.74973 -15.52106 -15.36885 -14.47205 -14.19399 -13.67013 -13.09324 -12.61071 -12.29217 -11.94470 -11.65369 -10.82656 -10.61695 -10.17379 -9.37716 -8.63833 -6.51139 0.92141 1.52522 1.60271 1.75921 1.81040 2.31148 2.56002 3.12306 3.96667 4.06789 4.10329 4.33550 4.82951 4.89917 5.25024 5.46544 5.58768 5.79411 6.07938 6.25546 6.51539 7.08139 7.44381 8.71409 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.071916 B = 0.014767 C = 0.013672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.249639 B = 1895.673016 C = 2047.423291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.016 4.016 3 Si 1.119 2.881 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.647 4.647 8 H 0.046 0.954 9 C 0.269 3.731 10 H 0.024 0.976 11 O -0.588 6.588 12 C -0.200 4.200 13 C -0.240 4.240 14 C -0.032 4.032 15 O -0.184 6.184 16 C -0.055 4.055 17 H 0.267 0.733 18 H 0.366 0.634 19 H 0.146 0.854 20 H 0.249 0.751 21 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 -6.849 -0.394 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.684 4.684 8 H 0.065 0.935 9 C 0.212 3.788 10 H 0.041 0.959 11 O -0.394 6.394 12 C -0.202 4.202 13 C -0.259 4.259 14 C -0.098 4.098 15 O -0.080 6.080 16 C -0.121 4.121 17 H 0.077 0.923 18 H 0.213 0.787 19 H 0.164 0.836 20 H 0.265 0.735 21 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.961 -5.461 -0.123 8.848 hybrid contribution 0.118 -1.469 -0.021 1.474 sum 7.079 -6.930 -0.143 9.907 Atomic orbital electron populations 1.70787 1.07985 1.31179 1.45456 1.27402 0.96465 1.06461 0.91492 0.82931 0.74079 0.71020 0.77999 1.20832 1.19186 1.19757 1.22678 0.94340 0.92965 1.58453 0.93542 1.17757 0.86578 0.89865 0.84568 0.95869 1.86449 1.39657 1.96626 1.16698 1.21565 1.03148 1.00448 0.94997 1.21965 1.04072 0.99674 1.00212 1.24698 1.01396 1.02408 0.81337 1.84005 1.54693 1.44465 1.24871 1.23851 0.96014 0.91715 1.00569 0.92256 0.78718 0.83617 0.73508 0.76725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.31 13.53 21.45 0.29 -57.02 14 2 C -0.02 -0.94 5.40 84.65 0.46 -0.49 14 3 Si 1.12 49.97 29.90 68.60 2.05 52.02 14 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 14 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 14 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 7 C -0.65 -36.98 8.75 25.60 0.22 -36.75 14 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 14 9 C 0.27 14.46 2.91 29.10 0.08 14.54 14 10 H 0.02 1.39 8.01 -2.39 -0.02 1.37 14 11 O -0.59 -30.76 11.93 -148.98 -1.78 -32.54 14 12 C -0.20 -8.96 5.12 -19.94 -0.10 -9.06 14 13 C -0.24 -9.16 10.87 22.19 0.24 -8.91 14 14 C -0.03 -0.94 12.09 66.97 0.81 -0.14 14 15 O -0.18 -6.20 10.65 -2.53 -0.03 -6.23 14 16 C -0.05 -2.08 11.51 66.97 0.77 -1.31 14 17 H 0.27 17.22 6.47 -92.71 -0.60 16.62 14 18 H 0.37 16.48 8.33 -74.06 -0.62 15.87 14 19 H 0.15 5.21 8.06 -2.91 -0.02 5.19 14 20 H 0.25 4.43 8.06 -2.91 -0.02 4.41 14 21 H 0.22 6.93 7.71 -2.91 -0.02 6.91 14 Total: -1.00 -69.59 198.35 3.81 -65.78 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.79 Total: 20.10 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 2.48 Total: -42.12 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.29 Total: -57.02 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.80 Total: -38.77 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -69.59 3.81 -65.78 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878729.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.211 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds