Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35208 * 125.97617 * 2 1 4 4 C 1.36031 * 107.61565 * 179.73720 * 3 2 1 5 5 N 1.40046 * 126.14225 * 180.24409 * 4 3 2 6 6 C 1.36780 * 120.00013 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99792 * 0.02562 * 6 5 4 8 8 C 1.38743 * 119.99639 * 179.97438 * 6 5 4 9 9 N 1.31645 * 120.00377 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99865 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47301 * 59.99894 * 10 8 6 12 12 H 1.48495 * 109.47449 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47011 * 299.99910 * 10 8 6 14 14 C 1.40446 * 107.71898 * 0.26226 * 4 3 2 15 15 N 1.30788 * 108.20512 * 0.02562 * 14 4 3 16 16 H 1.08997 * 109.47192 * 90.00102 * 1 2 3 17 17 H 1.09000 * 109.46844 * 210.00085 * 1 2 3 18 18 H 1.09002 * 109.47247 * 329.99853 * 1 2 3 19 19 H 1.08002 * 126.19544 * 0.02562 * 3 2 1 20 20 H 0.97000 * 119.99891 * 0.02562 * 5 4 3 21 21 H 0.96999 * 120.00260 * 179.97438 * 9 8 6 22 22 H 1.08003 * 125.89627 * 180.02562 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.0942 0.0000 4 6 3.5503 0.6657 0.0059 5 7 4.6905 1.4789 0.0128 6 6 5.9351 0.9116 0.0189 7 1 6.0385 -0.1634 0.0179 8 6 7.0646 1.7174 0.0251 9 7 6.9385 3.0277 0.0257 10 14 8.7644 0.9427 0.0327 11 1 8.9304 0.1015 -1.1798 12 1 9.7954 2.0113 0.0393 13 1 8.9186 0.0993 1.2452 14 6 3.5346 -0.7387 0.0035 15 7 2.2877 -1.1333 -0.0041 16 1 -0.3633 0.0000 -1.0276 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3634 0.8900 0.5139 19 1 1.9286 2.1223 0.0004 20 1 4.5975 2.4444 0.0140 21 1 7.7281 3.5910 0.0305 22 1 4.4024 -1.3817 0.0074 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086779349.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = 64.614327 kcal Electronic energy + Delta-G solvation = -9006.770403 eV Core-core repulsion = 7177.069268 eV Total energy + Delta-G solvation = -1829.701135 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.64273 -36.80584 -33.88795 -32.83848 -29.84305 -27.05648 -25.79981 -21.98751 -21.29966 -19.01405 -18.07335 -16.42599 -16.05270 -15.84973 -15.23572 -14.85606 -13.69586 -13.48787 -13.37913 -12.88498 -12.87975 -12.26413 -12.02034 -11.94263 -11.49366 -10.39863 -10.02016 -8.18471 -8.18351 -5.40479 1.14416 1.47836 1.50106 1.57775 1.98660 2.26171 2.45974 3.37706 3.71441 4.15053 4.33586 4.53515 4.59351 4.78552 5.04907 5.15514 5.43412 5.76780 6.11448 6.52397 6.96324 7.11807 7.86376 8.01209 9.02935 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.116389 B = 0.011656 C = 0.010656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 240.514009 B = 2401.692260 C = 2627.056798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.376 5.376 3 C -0.090 4.090 4 C 0.058 3.942 5 N -0.616 5.616 6 C -0.283 4.283 7 H 0.091 0.909 8 C -0.052 4.052 9 N -0.954 5.954 10 Si 0.989 3.011 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.272 1.272 14 C -0.019 4.019 15 N -0.306 5.306 16 H 0.079 0.921 17 H 0.090 0.910 18 H 0.106 0.894 19 H 0.182 0.818 20 H 0.389 0.611 21 H 0.263 0.737 22 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -3.616 0.071 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.168 5.168 3 C -0.240 4.240 4 C -0.056 4.056 5 N -0.236 5.236 6 C -0.414 4.414 7 H 0.109 0.891 8 C -0.247 4.247 9 N -0.599 5.599 10 Si 0.815 3.185 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.207 4.207 15 N -0.131 5.131 16 H 0.097 0.903 17 H 0.109 0.891 18 H 0.124 0.876 19 H 0.199 0.801 20 H 0.221 0.779 21 H 0.072 0.928 22 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.294 -4.579 0.066 10.361 hybrid contribution 1.513 1.039 -0.015 1.835 sum -7.782 -3.541 0.052 8.549 Atomic orbital electron populations 1.21999 0.72163 1.05327 1.03909 1.47963 1.06917 1.02288 1.59583 1.21522 0.89141 0.93742 1.19545 1.18382 0.88278 0.91394 1.07526 1.39836 1.00803 1.05623 1.77332 1.19679 0.83234 0.93147 1.45317 0.89134 1.25845 1.02693 0.95836 1.00303 1.69811 1.30714 1.03899 1.55488 0.85008 0.77581 0.77204 0.78745 1.19699 1.21345 1.19698 1.23477 0.95194 0.93926 1.08102 1.76827 1.01358 1.10461 1.24483 0.90264 0.89144 0.87597 0.80072 0.77855 0.92809 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 11.47 127.77 1.47 3.77 14 2 N -0.38 -13.29 4.02 -368.75 -1.48 -14.77 14 3 C -0.09 -3.51 11.54 83.66 0.97 -2.54 14 4 C 0.06 2.71 6.90 37.85 0.26 2.97 14 5 N -0.62 -32.52 5.48 -184.99 -1.01 -33.54 14 6 C -0.28 -15.64 9.71 84.04 0.82 -14.82 14 7 H 0.09 4.76 6.49 -2.91 -0.02 4.74 14 8 C -0.05 -2.88 5.50 84.84 0.47 -2.41 14 9 N -0.95 -55.82 13.05 21.64 0.28 -55.53 14 10 Si 0.99 44.05 29.55 68.60 2.03 46.07 14 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 14 12 H -0.29 -12.73 7.11 99.48 0.71 -12.02 14 13 H -0.27 -11.65 7.11 99.48 0.71 -10.95 14 14 C -0.02 -0.85 11.25 85.39 0.96 0.11 14 15 N -0.31 -12.53 12.56 -56.66 -0.71 -13.24 14 16 H 0.08 1.47 8.14 -2.39 -0.02 1.45 14 17 H 0.09 1.75 8.14 -2.39 -0.02 1.73 14 18 H 0.11 1.72 8.14 -2.39 -0.02 1.70 14 19 H 0.18 5.94 8.06 -2.91 -0.02 5.91 14 20 H 0.39 21.09 8.01 -92.71 -0.74 20.35 14 21 H 0.26 14.73 8.31 -92.71 -0.77 13.96 14 22 H 0.18 7.37 7.11 -2.91 -0.02 7.34 14 Total: -1.00 -65.18 204.77 4.52 -60.66 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.49 Total: 23.27 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.94 Total: -12.92 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -2.92 Total: -117.08 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -65.18 4.52 -60.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086779349.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.275 kcal (2) G-P(sol) polarization free energy of solvation -65.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds