Wall clock time and date at job start Mon Mar 30 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35310 * 125.86801 * 2 1 4 4 C 1.35348 * 106.17503 * 180.10838 * 3 2 1 5 5 C 1.50700 * 126.75241 * 179.84708 * 4 3 2 6 6 C 1.50702 * 109.46869 * 124.71667 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 N 1.33770 * 106.49624 * 359.59617 * 4 3 2 15 15 N 1.28632 * 108.88455 * 0.25241 * 14 4 3 16 16 H 1.08995 * 109.47704 * 270.33054 * 1 2 3 17 17 H 1.09001 * 109.46641 * 30.33167 * 1 2 3 18 18 H 1.08998 * 109.46935 * 150.32386 * 1 2 3 19 19 H 1.08000 * 126.91429 * 359.96633 * 3 2 1 20 20 H 1.09004 * 109.47210 * 4.71960 * 5 4 3 21 21 H 1.08994 * 109.47551 * 244.71612 * 5 4 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 -0.0025 5 6 4.7880 1.4734 -0.0067 6 6 5.6567 1.0783 1.1597 7 1 5.3321 0.3014 1.8361 8 6 6.8689 1.7043 1.3597 9 7 7.2643 2.6500 0.5358 10 14 7.9491 1.2092 2.8010 11 1 8.3028 -0.2283 2.6836 12 1 9.1888 2.0267 2.7941 13 1 7.2142 1.4360 4.0713 14 7 3.4576 -0.6952 0.0052 15 7 2.2192 -1.0430 0.0066 16 1 -0.3634 0.0059 1.0276 17 1 -0.3633 0.8870 -0.5190 18 1 -0.3633 -0.8929 -0.5088 19 1 1.9382 2.1281 -0.0005 20 1 4.5249 2.5279 0.0770 21 1 5.3312 1.3072 -0.9369 22 1 8.1169 3.0907 0.6767 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091797728.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:10 Heat of formation + Delta-G solvation = 91.072938 kcal Electronic energy + Delta-G solvation = -9004.420540 eV Core-core repulsion = 7175.866737 eV Total energy + Delta-G solvation = -1828.553804 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.44110 -34.40465 -33.04220 -31.01744 -27.97428 -26.96862 -23.37349 -21.28732 -20.20206 -16.66215 -16.25605 -15.77806 -14.51596 -14.01469 -13.29449 -13.08926 -12.39875 -12.07879 -11.63510 -10.99369 -10.69992 -10.64357 -10.08043 -9.67469 -9.42063 -9.26138 -8.41277 -8.11297 -5.96964 -3.97469 2.25881 2.92633 3.40232 3.42703 3.45021 3.53989 4.53166 4.73310 5.07985 5.23040 5.31775 5.40096 5.86610 6.10663 6.34168 7.15300 7.21171 7.55008 7.64755 8.00792 8.39658 9.05659 9.32761 9.65126 11.14155 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.099216 B = 0.011582 C = 0.011012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.144194 B = 2417.059124 C = 2542.136866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.309 5.309 3 C -0.084 4.084 4 C 0.033 3.967 5 C 0.092 3.908 6 C -0.504 4.504 7 H 0.058 0.942 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.278 1.278 14 N -0.263 5.263 15 N -0.113 5.113 16 H 0.082 0.918 17 H 0.091 0.909 18 H 0.093 0.907 19 H 0.182 0.818 20 H 0.037 0.963 21 H 0.039 0.961 22 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 -0.750 -0.718 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.105 5.105 3 C -0.233 4.233 4 C -0.104 4.104 5 C 0.053 3.947 6 C -0.543 4.543 7 H 0.077 0.923 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.130 5.130 15 N -0.092 5.092 16 H 0.100 0.900 17 H 0.110 0.890 18 H 0.112 0.888 19 H 0.199 0.801 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.741 -2.171 -0.748 11.964 hybrid contribution 0.320 1.029 0.806 1.346 sum -11.421 -1.143 0.058 11.479 Atomic orbital electron populations 1.22033 0.74281 1.04941 1.04083 1.47085 1.08485 1.05461 1.49430 1.23380 0.91402 0.93983 1.14491 1.23050 0.96432 0.90929 0.99977 1.17729 0.85963 0.92476 0.98519 1.21019 1.02728 1.19935 1.10590 0.92349 1.24976 0.97670 0.95095 0.96686 1.69939 1.21712 1.24950 1.37243 0.86564 0.79593 0.78680 0.82645 1.20092 1.21307 1.20349 1.75055 1.07810 1.13545 1.16574 1.78190 0.97358 1.12567 1.21078 0.89961 0.89024 0.88839 0.80071 0.94523 0.94280 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.39 59.85 0.68 1.55 14 2 N -0.31 -5.26 3.74 -68.06 -0.25 -5.52 14 3 C -0.08 -1.56 11.54 -17.05 -0.20 -1.76 14 4 C 0.03 0.79 6.44 -82.78 -0.53 0.26 14 5 C 0.09 2.45 5.55 -29.03 -0.16 2.29 14 6 C -0.50 -14.79 9.09 -34.44 -0.31 -15.10 14 7 H 0.06 1.75 7.74 -52.49 -0.41 1.34 14 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 14 9 N -0.90 -26.90 13.29 55.43 0.74 -26.17 14 10 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 14 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 14 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 14 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 14 N -0.26 -6.49 12.40 33.29 0.41 -6.07 14 15 N -0.11 -2.39 13.16 60.35 0.79 -1.60 14 16 H 0.08 0.68 8.14 -51.93 -0.42 0.25 14 17 H 0.09 0.63 8.14 -51.93 -0.42 0.21 14 18 H 0.09 0.78 8.14 -51.93 -0.42 0.36 14 19 H 0.18 2.64 8.06 -52.49 -0.42 2.22 14 20 H 0.04 0.96 8.12 -51.93 -0.42 0.54 14 21 H 0.04 1.10 8.14 -51.93 -0.42 0.68 14 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 14 LS Contribution 207.71 15.07 3.13 3.13 Total: -1.00 -33.98 207.71 -2.90 -36.88 By element: Atomic # 1 Polarization: -4.67 SS G_CDS: -2.08 Total: -6.74 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -0.62 Total: -11.22 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 1.69 Total: -39.36 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -33.98 -2.90 -36.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091797728.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.952 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds