Wall clock time and date at job start Mon Mar 30 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35310 * 125.86801 * 2 1 4 4 C 1.35348 * 106.17503 * 180.10838 * 3 2 1 5 5 C 1.50700 * 126.75241 * 179.84708 * 4 3 2 6 6 C 1.50702 * 109.46869 * 124.71667 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 N 1.33770 * 106.49624 * 359.59617 * 4 3 2 15 15 N 1.28632 * 108.88455 * 0.25241 * 14 4 3 16 16 H 1.08995 * 109.47704 * 270.33054 * 1 2 3 17 17 H 1.09001 * 109.46641 * 30.33167 * 1 2 3 18 18 H 1.08998 * 109.46935 * 150.32386 * 1 2 3 19 19 H 1.08000 * 126.91429 * 359.96633 * 3 2 1 20 20 H 1.09004 * 109.47210 * 4.71960 * 5 4 3 21 21 H 1.08994 * 109.47551 * 244.71612 * 5 4 3 22 22 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 -0.0025 5 6 4.7880 1.4734 -0.0067 6 6 5.6567 1.0783 1.1597 7 1 5.3321 0.3014 1.8361 8 6 6.8689 1.7043 1.3597 9 7 7.2643 2.6500 0.5358 10 14 7.9491 1.2092 2.8010 11 1 8.3028 -0.2283 2.6836 12 1 9.1888 2.0267 2.7941 13 1 7.2142 1.4360 4.0713 14 7 3.4576 -0.6952 0.0052 15 7 2.2192 -1.0430 0.0066 16 1 -0.3634 0.0059 1.0276 17 1 -0.3633 0.8870 -0.5190 18 1 -0.3633 -0.8929 -0.5088 19 1 1.9382 2.1281 -0.0005 20 1 4.5249 2.5279 0.0770 21 1 5.3312 1.3072 -0.9369 22 1 8.1169 3.0907 0.6767 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091797728.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:10 Heat of formation + Delta-G solvation = 66.109719 kcal Electronic energy + Delta-G solvation = -9005.503027 eV Core-core repulsion = 7175.866737 eV Total energy + Delta-G solvation = -1829.636290 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.99338 -36.02868 -34.93962 -32.86000 -29.61442 -28.39756 -25.44762 -22.75653 -21.87577 -18.51096 -17.88472 -17.29458 -16.52484 -15.55720 -14.66455 -14.45058 -14.02524 -13.60082 -13.52228 -12.81076 -12.65560 -12.48676 -11.89191 -11.67840 -11.37364 -10.80201 -10.57868 -9.86259 -8.18499 -6.27353 0.78378 1.40558 1.44313 1.52049 1.74149 1.77486 2.44976 3.14096 3.67770 3.98195 4.35143 4.40444 4.49866 4.66385 4.87114 5.30346 5.44937 5.55009 5.76866 5.88906 6.22980 6.80585 7.39158 7.71774 8.92246 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.099216 B = 0.011582 C = 0.011012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 282.144194 B = 2417.059124 C = 2542.136866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.289 5.289 3 C -0.052 4.052 4 C -0.012 4.012 5 C 0.101 3.899 6 C -0.526 4.526 7 H 0.044 0.956 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.963 3.037 11 H -0.276 1.276 12 H -0.275 1.275 13 H -0.268 1.268 14 N -0.314 5.314 15 N -0.128 5.128 16 H 0.105 0.895 17 H 0.130 0.870 18 H 0.108 0.892 19 H 0.227 0.773 20 H 0.036 0.964 21 H 0.007 0.993 22 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -0.300 0.006 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.085 5.085 3 C -0.203 4.203 4 C -0.151 4.151 5 C 0.063 3.937 6 C -0.565 4.565 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.193 1.193 14 N -0.180 5.180 15 N -0.107 5.107 16 H 0.124 0.876 17 H 0.149 0.851 18 H 0.127 0.873 19 H 0.244 0.756 20 H 0.054 0.946 21 H 0.025 0.975 22 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.438 -1.746 -0.028 13.551 hybrid contribution 0.669 0.903 0.542 1.248 sum -12.769 -0.843 0.514 12.807 Atomic orbital electron populations 1.22713 0.69695 1.07756 1.06505 1.47610 1.10845 1.03991 1.46066 1.23807 0.89705 0.95966 1.10823 1.22730 0.97384 0.90976 1.04008 1.17395 0.87219 0.92974 0.96155 1.21264 1.03925 1.19840 1.11431 0.93814 1.25808 0.98869 0.94940 0.99409 1.70034 1.22287 1.25656 1.38695 0.85543 0.78053 0.78217 0.79460 1.20175 1.19961 1.19298 1.74953 1.09968 1.14483 1.18633 1.78050 0.96735 1.13882 1.22074 0.87646 0.85136 0.87303 0.75613 0.94613 0.97451 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 11.39 127.77 1.46 2.53 14 2 N -0.29 -9.04 3.74 -369.24 -1.38 -10.42 14 3 C -0.05 -1.82 11.54 83.49 0.96 -0.86 14 4 C -0.01 -0.59 6.44 41.60 0.27 -0.32 14 5 C 0.10 5.56 5.55 29.10 0.16 5.72 14 6 C -0.53 -31.60 9.09 25.60 0.23 -31.37 14 7 H 0.04 2.69 7.74 -2.91 -0.02 2.67 14 8 C 0.01 0.47 5.46 84.66 0.46 0.93 14 9 N -0.93 -56.04 13.29 21.45 0.28 -55.76 14 10 Si 0.96 45.98 29.54 68.60 2.03 48.01 14 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 14 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 14 13 H -0.27 -12.30 7.11 99.48 0.71 -11.60 14 14 N -0.31 -15.75 12.40 -48.60 -0.60 -16.36 14 15 N -0.13 -5.32 13.16 37.02 0.49 -4.84 14 16 H 0.11 1.22 8.14 -2.39 -0.02 1.20 14 17 H 0.13 1.03 8.14 -2.39 -0.02 1.01 14 18 H 0.11 1.37 8.14 -2.39 -0.02 1.35 14 19 H 0.23 5.58 8.06 -2.91 -0.02 5.56 14 20 H 0.04 1.91 8.12 -2.38 -0.02 1.89 14 21 H 0.01 0.44 8.14 -2.39 -0.02 0.42 14 22 H 0.27 15.10 8.31 -92.70 -0.77 14.32 14 Total: -1.00 -75.67 207.71 5.56 -70.10 By element: Atomic # 1 Polarization: -8.58 SS G_CDS: 1.21 Total: -7.37 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.54 Total: -23.36 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.21 Total: -87.37 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.67 5.56 -70.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091797728.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.210 kcal (2) G-P(sol) polarization free energy of solvation -75.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds