Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40065 * 125.90366 * 2 1 4 4 C 1.32917 * 108.11830 * 179.73794 * 3 2 1 5 5 C 1.41414 * 126.05936 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99858 * 179.97438 * 5 4 3 7 7 C 1.39807 * 119.99699 * 359.97438 * 5 4 3 8 8 N 1.30915 * 120.00478 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99887 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47050 * 89.99386 * 9 7 5 11 11 H 1.48496 * 109.47312 * 209.99562 * 9 7 5 12 12 H 1.48500 * 109.47034 * 329.99649 * 9 7 5 13 13 C 1.41663 * 107.88112 * 359.97438 * 4 3 2 14 14 C 1.35517 * 107.81092 * 0.02562 * 13 4 3 15 15 N 1.39091 * 126.00024 * 180.02562 * 14 13 4 16 16 H 1.09005 * 109.46833 * 90.02440 * 1 2 3 17 17 H 1.09001 * 109.46973 * 210.01928 * 1 2 3 18 18 H 1.08995 * 109.47389 * 330.02599 * 1 2 3 19 19 H 0.96993 * 120.00232 * 180.02562 * 8 7 5 20 20 H 1.08008 * 126.09443 * 180.02562 * 13 4 3 21 21 H 0.97003 * 120.00226 * 179.97438 * 15 14 13 22 22 H 0.96998 * 119.99992 * 359.97167 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1345 0.0000 4 6 3.5520 0.7285 0.0058 5 6 4.6938 1.5629 0.0073 6 1 5.6816 1.1262 0.0126 7 6 4.5439 2.9528 0.0019 8 7 3.3465 3.4821 -0.0051 9 14 6.0521 4.0550 0.0045 10 1 6.4579 4.3421 -1.3948 11 1 5.7335 5.3284 0.6987 12 1 7.1641 3.3705 0.7118 13 6 3.5544 -0.6881 0.0102 14 6 2.2649 -1.1048 0.0063 15 7 1.8329 -2.4269 0.0092 16 1 -0.3633 -0.0004 -1.0277 17 1 -0.3633 -0.8898 0.5141 18 1 -0.3634 0.8902 0.5134 19 1 3.2425 4.4464 -0.0092 20 1 4.4282 -1.3229 0.0157 21 1 0.8837 -2.6270 0.0063 22 1 2.4807 -3.1488 0.0140 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107217428.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = 73.751881 kcal Electronic energy + Delta-G solvation = -9201.863197 eV Core-core repulsion = 7372.558296 eV Total energy + Delta-G solvation = -1829.304901 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.98219 -33.87711 -32.67268 -31.28675 -27.06224 -26.32168 -23.95203 -19.58968 -19.09012 -16.93451 -15.45581 -15.30994 -14.50015 -14.04820 -13.25235 -12.46530 -12.18813 -11.74429 -11.26790 -11.03867 -10.83470 -10.29695 -9.82496 -9.80743 -8.81184 -8.19907 -7.28997 -6.27121 -6.19615 -4.12738 3.22581 3.30364 3.34815 3.75667 3.97706 4.27318 4.58399 4.78968 5.57955 5.85789 6.01122 6.15214 6.96361 7.02310 7.41055 7.53292 7.61613 8.08671 8.36416 8.70286 8.92934 9.16650 9.39654 10.16391 10.77983 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.092170 B = 0.014521 C = 0.012631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.712260 B = 1927.725177 C = 2216.292644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.444 5.444 3 N -0.329 5.329 4 C 0.229 3.771 5 C -0.446 4.446 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.779 5.779 9 Si 0.905 3.095 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C -0.372 4.372 14 C 0.322 3.678 15 N -0.877 5.877 16 H 0.045 0.955 17 H 0.052 0.948 18 H 0.074 0.926 19 H 0.268 0.732 20 H 0.113 0.887 21 H 0.384 0.616 22 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -5.952 0.114 6.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.233 5.233 3 N -0.158 5.158 4 C 0.074 3.926 5 C -0.485 4.485 6 H 0.096 0.904 7 C -0.147 4.147 8 N -0.408 5.408 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.190 1.190 13 C -0.407 4.407 14 C 0.101 3.899 15 N -0.427 5.427 16 H 0.063 0.937 17 H 0.071 0.929 18 H 0.093 0.907 19 H 0.078 0.922 20 H 0.131 0.869 21 H 0.210 0.790 22 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.836 -4.698 0.111 6.067 hybrid contribution 0.963 -0.645 -0.013 1.160 sum -2.873 -5.344 0.097 6.068 Atomic orbital electron populations 1.21134 0.78584 1.01645 1.00465 1.48991 1.04451 1.03736 1.66086 1.79016 1.00248 0.97460 1.39065 1.19142 0.92278 0.89483 0.91718 1.18595 0.91638 0.89799 1.48510 0.90417 1.25794 0.96355 0.98768 0.93763 1.69973 1.22266 1.11793 1.36733 0.86381 0.82451 0.79417 0.78654 1.19972 1.20738 1.18991 1.20512 0.92479 0.96244 1.31480 1.18106 0.91106 0.80614 1.00024 1.41349 1.08679 1.03031 1.89596 0.93680 0.92887 0.90740 0.92163 0.86857 0.79001 0.76941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.34 11.28 59.85 0.68 3.01 14 2 N -0.44 -11.04 4.05 -67.15 -0.27 -11.31 14 3 N -0.33 -9.90 10.82 32.24 0.35 -9.56 14 4 C 0.23 6.88 6.75 -84.88 -0.57 6.31 14 5 C -0.45 -13.21 9.39 -37.79 -0.35 -13.56 14 6 H 0.08 2.16 7.84 -52.49 -0.41 1.75 14 7 C 0.07 2.03 5.49 -17.36 -0.10 1.93 14 8 N -0.78 -23.15 11.93 55.54 0.66 -22.49 14 9 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 14 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 13 C -0.37 -9.78 10.78 -39.25 -0.42 -10.20 14 14 C 0.32 7.48 7.96 -152.71 -1.21 6.27 14 15 N -0.88 -14.53 9.10 31.17 0.28 -14.25 14 16 H 0.04 0.77 8.14 -51.93 -0.42 0.35 14 17 H 0.05 0.78 7.48 -51.93 -0.39 0.39 14 18 H 0.07 1.38 8.14 -51.93 -0.42 0.96 14 19 H 0.27 7.28 8.30 -40.82 -0.34 6.94 14 20 H 0.11 2.72 8.06 -52.48 -0.42 2.30 14 21 H 0.38 5.27 8.08 -40.82 -0.33 4.94 14 22 H 0.40 5.66 8.95 -40.82 -0.37 5.29 14 LS Contribution 203.43 15.07 3.07 3.07 Total: -1.00 -34.55 203.43 -4.82 -39.37 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -1.90 Total: 5.80 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.99 Total: -6.24 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 1.02 Total: -57.60 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -34.55 -4.82 -39.37 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217428.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.119 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds