Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39994 * 125.93319 * 2 1 4 4 H 0.97004 * 125.66318 * 0.02562 * 3 2 1 5 5 C 1.34652 * 108.67779 * 179.85657 * 3 2 1 6 6 O 1.21786 * 125.86936 * 180.14940 * 5 3 2 7 7 C 1.41439 * 108.25849 * 0.40322 * 5 3 2 8 8 C 1.38526 * 125.92944 * 180.30626 * 2 1 3 9 9 C 1.40131 * 126.28625 * 359.95697 * 8 2 1 10 10 H 1.08002 * 120.00595 * 340.81837 * 9 8 2 11 11 C 1.40583 * 119.99696 * 160.82036 * 9 8 2 12 12 N 1.30446 * 119.99648 * 164.03199 * 11 9 8 13 13 Si 1.86801 * 119.99996 * 344.03494 * 11 9 8 14 14 H 1.48492 * 109.47214 * 91.63834 * 13 11 9 15 15 H 1.48500 * 109.46823 * 211.64188 * 13 11 9 16 16 H 1.48499 * 109.46874 * 331.63635 * 13 11 9 17 17 H 1.09000 * 109.47067 * 269.69127 * 1 2 3 18 18 H 1.09001 * 109.46479 * 29.69150 * 1 2 3 19 19 H 1.08996 * 109.46908 * 149.69542 * 1 2 3 20 20 H 1.08006 * 126.24729 * 179.72959 * 7 5 3 21 21 H 0.97006 * 119.99246 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2866 1.1335 0.0000 4 1 1.9803 2.0540 0.0004 5 6 3.5725 0.7341 0.0032 6 8 4.5467 1.4649 0.0067 7 6 3.5973 -0.6800 -0.0041 8 6 2.2779 -1.1217 -0.0060 9 6 1.8499 -2.4560 -0.0123 10 1 0.8440 -2.7020 0.2944 11 6 2.7300 -3.4745 -0.4178 12 7 2.4601 -4.7196 -0.1374 13 14 4.2858 -3.0449 -1.3581 14 1 5.4043 -2.8489 -0.4013 15 1 4.6209 -4.1501 -2.2918 16 1 4.0689 -1.7944 -2.1290 17 1 -0.3633 -0.0055 1.0277 18 1 -0.3632 0.8928 -0.5091 19 1 -0.3633 -0.8872 -0.5185 20 1 4.4794 -1.3033 -0.0079 21 1 3.0672 -5.4224 -0.4175 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107217441.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = 26.088507 kcal Electronic energy + Delta-G solvation = -9477.089800 eV Core-core repulsion = 7547.999398 eV Total energy + Delta-G solvation = -1929.090402 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.72276 -35.83387 -33.89931 -30.99412 -30.75619 -26.10114 -24.78266 -20.46958 -19.71502 -17.25417 -16.71270 -15.19934 -14.61524 -14.05381 -13.91528 -12.96752 -12.87921 -12.40544 -11.93103 -11.59348 -11.06437 -10.88742 -10.35688 -9.68584 -9.41500 -8.50554 -8.24987 -7.17459 -6.51649 -4.96564 2.86257 2.94230 3.23413 3.32612 3.47419 4.04621 4.49972 5.02371 5.10164 5.57900 5.79179 5.98431 6.53356 7.01137 7.12448 7.17823 7.63499 7.94774 8.03182 8.28598 8.77646 8.85688 9.76196 9.80939 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.049440 B = 0.023339 C = 0.016659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.202532 B = 1199.425132 C = 1680.392051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.437 5.437 3 N -0.550 5.550 4 H 0.409 0.591 5 C 0.541 3.459 6 O -0.617 6.617 7 C -0.527 4.527 8 C 0.331 3.669 9 C -0.438 4.438 10 H 0.097 0.903 11 C 0.105 3.895 12 N -0.786 5.786 13 Si 0.928 3.072 14 H -0.265 1.265 15 H -0.297 1.297 16 H -0.238 1.238 17 H 0.047 0.953 18 H 0.061 0.939 19 H 0.087 0.913 20 H 0.130 0.870 21 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 1.904 -1.542 5.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.241 5.241 3 N -0.297 5.297 4 H 0.252 0.748 5 C 0.347 3.653 6 O -0.505 6.505 7 C -0.554 4.554 8 C 0.222 3.778 9 C -0.471 4.471 10 H 0.115 0.885 11 C -0.121 4.121 12 N -0.409 5.409 13 Si 0.755 3.245 14 H -0.191 1.191 15 H -0.225 1.225 16 H -0.161 1.161 17 H 0.065 0.935 18 H 0.080 0.920 19 H 0.106 0.894 20 H 0.148 0.852 21 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.719 2.113 -1.520 5.390 hybrid contribution 0.252 0.425 -0.197 0.531 sum -4.468 2.538 -1.717 5.418 Atomic orbital electron populations 1.21497 0.76120 1.02989 1.01211 1.46274 1.01465 0.97346 1.79063 1.45551 1.03995 1.00630 1.79514 0.74843 1.16751 0.79979 0.90273 0.78316 1.90679 1.35324 1.63165 1.61328 1.21412 0.95358 0.93635 1.45030 1.18153 0.87895 0.85320 0.86448 1.18629 1.01697 0.86820 1.39940 0.88524 1.25996 0.99456 0.93743 0.92888 1.69423 1.37116 1.01378 1.32998 0.86058 0.79885 0.78551 0.80042 1.19063 1.22543 1.16051 0.93493 0.92019 0.89420 0.85234 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.93 11.25 59.85 0.67 2.60 14 2 N -0.44 -9.44 4.11 -65.31 -0.27 -9.71 14 3 N -0.55 -12.20 7.17 29.04 0.21 -11.99 14 4 H 0.41 7.45 8.96 -182.67 -1.64 5.81 14 5 C 0.54 14.62 8.30 -15.10 -0.13 14.50 14 6 O -0.62 -18.24 18.06 5.11 0.09 -18.15 14 7 C -0.53 -14.37 8.19 -38.03 -0.31 -14.68 14 8 C 0.33 8.31 6.30 -83.79 -0.53 7.78 14 9 C -0.44 -10.98 9.38 -37.99 -0.36 -11.33 14 10 H 0.10 2.38 7.80 -52.49 -0.41 1.97 14 11 C 0.10 2.60 5.51 -17.26 -0.10 2.50 14 12 N -0.79 -19.42 13.91 55.58 0.77 -18.64 14 13 Si 0.93 21.37 24.53 -169.99 -4.17 17.20 14 14 H -0.26 -6.24 6.70 56.52 0.38 -5.86 14 15 H -0.30 -6.41 7.11 56.52 0.40 -6.01 14 16 H -0.24 -5.82 6.56 56.52 0.37 -5.45 14 17 H 0.05 0.66 8.14 -51.93 -0.42 0.24 14 18 H 0.06 0.77 8.14 -51.93 -0.42 0.35 14 19 H 0.09 1.31 7.66 -51.93 -0.40 0.92 14 20 H 0.13 3.59 4.23 -52.48 -0.22 3.36 14 21 H 0.29 6.57 8.29 -40.82 -0.34 6.23 14 LS Contribution 190.30 15.07 2.87 2.87 Total: -1.00 -31.56 190.30 -3.94 -35.50 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -2.70 Total: 1.56 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.74 Total: 1.38 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.71 Total: -40.35 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.09 Total: -18.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.17 Total: 17.20 kcal Total LS contribution 2.87 Total: 2.87 kcal Total: -31.56 -3.94 -35.50 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107217441.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.593 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds